ncRNA ID | novel_egu_miR343 |
Species | Elaeis guineensis |
Class | miRNA |
Genome position | Chr15:6993894-6994061 [+] |
Reference genome | EG5 |
Source | SRR5189967 |
Length | 19 |
Mature sequence(if miRNA) | 1 - AACUGCUUGUAUACAAAAA - 19 |
Stem-loop(if miRNA) |
--                   U            GAA    UC   CC    C   AA    -   A   -AAU   -     UUUA   AACUGCUUGUAUACAAAAA AUUAUAUGAUUU   GAUC  UAA  UAUG AUC  AUGA UCA AAA    AUA UCUAA    A   ||||||||||||||||||| ||||||||||||   ||||  |||  |||| |||  |||| ||| |||    ||| |||||    U   UUGACGAACGUGUGUUUUU UAGUAUACUAAA   UUAG  AUU  AUAC UAG  UGCU AGU UUU    UAU AGGUU    U UU                   -            -GA    GA   -A    A   -G    C   C   AACU   C     UAUU |
Stem-loop sequence | AACUGCUUGUAUACAAAAAUAUUAUAUGAUUUGAAGAUCUCUAACCUAUGCAUCAAAUGAUCAAAAAAAUAUAUCUAAUUUAAUUUUAUUUGGACUAUUCAAUUUCUGACUCGUGGAUACAUAAUUAAGGAUUAGAAAUCAUAUGAUUUUUUGUGUGCAAGCAGUUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GBSV01023565.1 |
|
2.5 | TSA: Elaeis guineensis Unigene5394_All transcribed RNA sequence | NA | coding protein | psRNATarget |