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BaseInfo

ncRNA ID novel_egu_miR343
Species Elaeis guineensis
Class miRNA
Genome position Chr15:6993894-6994061 [+]
Reference genome EG5
Source SRR5189967
Length 19
Mature sequence(if miRNA) 1 - AACUGCUUGUAUACAAAAA - 19
Stem-loop(if miRNA) --                   U            GAA    UC   CC    C   AA    -   A   -AAU   -     UUUA
  AACUGCUUGUAUACAAAAA AUUAUAUGAUUU   GAUC  UAA  UAUG AUC  AUGA UCA AAA    AUA UCUAA    A
  ||||||||||||||||||| ||||||||||||   ||||  |||  |||| |||  |||| ||| |||    ||| |||||    U
  UUGACGAACGUGUGUUUUU UAGUAUACUAAA   UUAG  AUU  AUAC UAG  UGCU AGU UUU    UAU AGGUU    U
UU                   -            -GA    GA   -A    A   -G    C   C   AACU   C     UAUU
Stem-loop sequence AACUGCUUGUAUACAAAAAUAUUAUAUGAUUUGAAGAUCUCUAACCUAUGCAUCAAAUGAUCAAAAAAAUAUAUCUAAUUUAAUUUUAUUUGGACUAUUCAAUUUCUGACUCGUGGAUACAUAAUUAAGGAUUAGAAAUCAUAUGAUUUUUUGUGUGCAAGCAGUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01023565.1
ncRNA:19   AAAAACAUAUGUUCGUCAA   1
  ||||*|||*||||||||||
targets:318   UUUUCGUAAACAAGCAGUU   336

2.5 TSA: Elaeis guineensis Unigene5394_All transcribed RNA sequence NA coding protein psRNATarget