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BaseInfo

ncRNA ID novel_egu_miR329
Species Elaeis guineensis
Class miRNA
Genome position Chr1:18976981-18977031 [+]
Reference genome EG5
Source SRR5189967
Length 24
Mature sequence(if miRNA) 28 - GGUGAUGGCGUUCGGUCGAUCGGU - 51
Stem-loop(if miRNA) --       UA   G       A  G
  CGAUCGG  GAA GCCAUUA UC G
  |||||||  ||| ||||||| ||
  GCUAGCU  CUU CGGUAGU GG C
UG       GG   G       -  C
Stem-loop sequence CGAUCGGUAGAAGGCCAUUAAUCGGCCGGUGAUGGCGUUCGGUCGAUCGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01012479.1
ncRNA:24   UGGCUAGCUGGCUUGCGGUAGUGG   1
  ||=--|||||=|||=|||||||||
targets:1692   ACU--UCGACUGAAUGCCAUCACC   1713

2.5 TSA: Elaeis guineensis CL4494.Contig5_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01012478.1
ncRNA:24   UGGCUAGCUGGCUUGCGGUAGUGG   1
  ||=--|||||=|||=|||||||||
targets:1469   ACU--UCGACUGAAUGCCAUCACC   1490

2.5 TSA: Elaeis guineensis CL4494.Contig4_All transcribed RNA sequence NA coding protein psRNATarget