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BaseInfo

ncRNA ID	novel_egu_miR316
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr10:16903208-16903358 [-]
Reference genome	EG5
Source	SRR5189967
Length	23
Mature sequence(if miRNA)	129 - AGGGAGGGAGAGAAGGAGAGGGA - 151
Stem-loop(if miRNA)	--     -     A            A      AG  GG  A  A  G         A   GAA     -A  C  U   AGGGA GGGAG GAAGGAGAGGGA AGGGUA  GA  UU GU GU GCCGUCGGA GGC   GGAAG  UC AA C   ||||| ||||| |||||||||||| ||||||  ||  || || || ||||||||| |||   |||||  || ||   UCUCU CCCUC CUUCCUCUCCUU UCCCGU  CU  AA CA CA UGGCAGCUU CCG   CCUUC  AG UU A UC     A     C            C      CU  GA  C  C  G         C   -AG     GA  A  U
Stem-loop sequence	AGGGAGGGAGAGAAGGAGAGGGAAAGGGUAAGGAGGUUAGUAGUGGCCGUCGGAAGGCGAAGGAAGAUCCAAUCAUUUAGAAGCUUCCGAGCCCUUCGACGGUGACCACCAAAGUCUCUGCCCUCUUCCUCUCCUUCCCUCCCAUCUCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010945155.2	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   |||=||||||||||||||||||| targets:171   UCCUUCUCCUUCUCUCCCUCCCU   193 Target Full Sequence	0.0	PREDICTED: Elaeis guineensis uncharacterized membrane protein At1g75140-like (LOC105061183), mRNA	NA	coding protein	psRNATarget
XM_010937793.2	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   |=|||||||*||||||||||||| targets:9   UUCCUCUCCAUCUCUCCCUCCCU   31 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis uncharacterized LOC105055799 (LOC105055799), mRNA	NA	coding protein	psRNATarget
XM_010940718.2	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   |||=*|||||||||||||||||| targets:550   UCCUCCUCCUUCUCUCCCUCCCU   572 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis galactomannan galactosyltransferase 1-like (LOC105057970), mRNA	NA	coding protein	psRNATarget
GBSV01028207.1	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   ||=|||||=|||||||||||||* targets:187   UCUCUCUCUUUCUCUCCCUCCCC   209 Target Full Sequence	2.0	TSA: Elaeis guineensis Unigene10040_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010936345.1	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   ||=|||||=|||||||||||||* targets:29   UCUCUCUCUUUCUCUCCCUCCCC   51 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis elongation factor-like GTPase 1 (LOC105054755), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010936346.1	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   ||=|||||=|||||||||||||* targets:29   UCUCUCUCUUUCUCUCCCUCCCC   51 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis elongation factor-like GTPase 1 (LOC105054755), transcript variant X2, mRNA	NA	coding protein	psRNATarget
GBSV01015510.1	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   ||=|||||=*||||||||||||| targets:408   UCUCUCUCUCUCUCUCCCUCCCU   430 Target Full Sequence	2.0	TSA: Elaeis guineensis CL5755.Contig2_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010915043.2	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   ||=|||||=*||||||||||||| targets:179   UCUCUCUCUCUCUCUCCCUCCCU   201 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis uncharacterized LOC105039063 (LOC105039063), mRNA	NA	coding protein	psRNATarget
XM_010938118.1	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   ||=|||||=*||||||||||||| targets:27   UCUCUCUCUCUCUCUCCCUCCCU   49 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis nuclear transcription factor Y subunit B-3-like (LOC105056056), mRNA	NA	coding protein	psRNATarget
GBSV01022659.1	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   ||=|||||=*||||||||||||| targets:5   UCUCUCUCUCUCUCUCCCUCCCU   27 Target Full Sequence	2.0	TSA: Elaeis guineensis Unigene4488_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_019847285.1	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   ||=|||||||||||||=|||||* targets:24   UCUCUCUCCUUCUCUCUCUCCCC   46 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105039516 (LOC105039516), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019847294.1	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   ||=|||||||||||||=|||||* targets:24   UCUCUCUCCUUCUCUCUCUCCCC   46 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105039516 (LOC105039516), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_019847292.1	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   ||=|||||||||||||=|||||* targets:24   UCUCUCUCCUUCUCUCUCUCCCC   46 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105039516 (LOC105039516), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_010944957.2	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   |=||||||||||||||=|||||* targets:50   UUCCUCUCCUUCUCUCUCUCCCC   72 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis nucleobase-ascorbate transporter 1 (LOC105061034), mRNA	NA	coding protein	psRNATarget
XM_010931361.2	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   |||||||||*||||||=|||||| targets:37   UCCCUCUCCCUCUCUCUCUCCCU   59 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis transcription factor ICE1 (LOC105051080), mRNA	NA	coding protein	psRNATarget
XM_010942169.2	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   ||=|||||=||||*||||||||| targets:144   UCUCUCUCUUUCUAUCCCUCCCU   166 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis probable serine/threonine-protein kinase At5g41260 (LOC105059035), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010942168.2	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   ||=|||||=||||*||||||||| targets:138   UCUCUCUCUUUCUAUCCCUCCCU   160 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis probable serine/threonine-protein kinase At5g41260 (LOC105059035), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010942170.2	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   ||=|||||=||||*||||||||| targets:155   UCUCUCUCUUUCUAUCCCUCCCU   177 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis probable serine/threonine-protein kinase At5g41260 (LOC105059035), transcript variant X3, mRNA	NA	coding protein	psRNATarget
GBSV01017696.1	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   |||=|||||*|=||||||||||| targets:141   UCCUUCUCCCUUUCUCCCUCCCU   163 Target Full Sequence	2.5	TSA: Elaeis guineensis CL6737.Contig3_All transcribed RNA sequence	NA	coding protein	psRNATarget
GBSV01017695.1	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   |||=|||||*|=||||||||||| targets:141   UCCUUCUCCCUUUCUCCCUCCCU   163 Target Full Sequence	2.5	TSA: Elaeis guineensis CL6737.Contig2_All transcribed RNA sequence	NA	coding protein	psRNATarget
GBSV01015836.1	ncRNA:23   AG-GGAGAGGAAGAGAGGGAGGGA   1   ||-|||||||||||||=||||||* targets:93   UCUCCUCUCCUUCUCUUCCUCCCC   116 Target Full Sequence	2.5	TSA: Elaeis guineensis CL5894.Contig2_All transcribed RNA sequence	NA	coding protein	psRNATarget
GBSV01039987.1	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   ||=||||*|||||||||=||||| targets:199   UCUCUCUGCUUCUCUCCUUCCCU   221 Target Full Sequence	2.5	TSA: Elaeis guineensis Unigene21826_All transcribed RNA sequence	NA	coding protein	psRNATarget
GBSV01020459.1	ncRNA:23   AGGGAGAGGAAGAG-AGGGAGGGA   1   ||||||||||||||-||||||||| targets:174   UCCCUCUCCUUCUCGUCCCUCCCU   197 Target Full Sequence	3.0	TSA: Elaeis guineensis Unigene2287_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010913749.2	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   ||||||*=||||||||||||||* targets:86   UCCCUCCUCUUCUCUCCCUCCCA   108 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis uncharacterized LOC105038057 (LOC105038057), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019848398.1	ncRNA:23   AGGGAGAGGAAGAGAGGGAGGGA   1   ||||||*=||||||||||||||* targets:86   UCCCUCCUCUUCUCUCCCUCCCA   108 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis uncharacterized LOC105038057 (LOC105038057), transcript variant X2, mRNA	NA	coding protein	psRNATarget