Search result

BaseInfo

ncRNA ID novel_egu_miR315
Species Elaeis guineensis
Class miRNA
Genome position Chr13:7154441-7154528 [+]
Reference genome EG5
Source SRR5189967
Length 19
Mature sequence(if miRNA) 1 - AGAGAUCGCAUCUUGACAG - 19
Stem-loop(if miRNA) --        -      GACA   AAAAA         -    C   A
  AGAGAUCG CAUCUU    GUU     UUUUCUUUU CUCU AAG C
  |||||||| ||||||    |||     ||||||||| |||| ||| A
  UCUUUAGU GUAGAA    UAA     AGAAGAAGA GAGA UUC C
CA        A      -GAA   -----         A    -   U
Stem-loop sequence AGAGAUCGCAUCUUGACAGUUAAAAAUUUUCUUUUCUCUCAAGACACUCUUAGAGAAGAAGAAGAAAUAAGAAGAUGAUGAUUUCUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01038099.1
ncRNA:19   GACAGUUCUACGCUAGAGA   1
  ||||*||||||*|||||||
targets:100   CUGUGAAGAUGAGAUCUCU   118

2.5 TSA: Elaeis guineensis Unigene19935_All transcribed RNA sequence NA coding protein psRNATarget
XM_010915100.2
ncRNA:19   GACAGUUCUACGCUAGAGA   1
  ||*||||||||*|||||||
targets:1041   CUAUCAAGAUGGGAUCUCU   1059

2.5 PREDICTED: Elaeis guineensis GDSL esterase/lipase At4g26790-like (LOC105039102), mRNA NA coding protein psRNATarget
GBSV01033626.1
ncRNA:19   GACAGUUCUACGCUAGAGA   1
  **||*||||||||||||||
targets:806   AGGUAAAGAUGCGAUCUCU   824

3.0 TSA: Elaeis guineensis Unigene15459_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01034923.1
ncRNA:19   GACAGUUCUACGCUAGAGA   1
  ||**||||||||||||||*
targets:339   CUUCCAAGAUGCGAUCUCC   357

3.0 TSA: Elaeis guineensis Unigene16756_All transcribed RNA sequence NA coding protein psRNATarget