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BaseInfo

ncRNA ID	ath-miRf10880-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - GCUCGACCUGGGGGUCGAGUGGU - NA
Stem-loop(if miRNA)	UG       U             UCU   G   C  CUCGACC GGGGGUCGAGUGG   CUU AGA |  ||||||| |||||||||||||   ||| ||U G  GAGCUGG UCUCCAGCUCAUC   GAA UUC  GU       U             CUC   G
Stem-loop sequence	CUGCUCGACCUGGGGGUCGAGUGGUCUCUUGAGAUCUUGAAGCUCCUACUCGACCUCUUGGUCGAGUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_103391.1	ncRNA:23   UGGUGAGCUGGGGGUCCAGCUCG   1   ||||||||||||||||||||||= targets:1103   ACCACUCGACCCCCAGGUCGAGU   1125 Target Full Sequence	1.0	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT025674.1	ncRNA:23   UGGUGAGCUGGGGGUCCAGCUCG   1   *|=|||||||||||||||||||= targets:186   UCUACUCGACCCCCAGGUCGAGU   208 Target Full Sequence	1.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT025674.1	ncRNA:23   UGG--UGAGCUGGGGGUCCAGCUCG   1   |||--|||||||||||*|||||||= targets:305   ACCUUACUCGACCCCCUGGUCGAGU   329 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   UGGUGAGCUGGGGGUCCAGCUCG   1   =|||||||||||||*|||||||= targets:229   GCCACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:23   UGGUGAGCUGGGGGUCCAGCUCG   1   *|=|||||||||||*|||||||= targets:180   UCUACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   UGGUGAGCUGGGGGUCCAGCUCG   1   =|||||||||||||*|||||||= targets:229   GCCACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:23   UGGUGAGCUGGGGGUCCAGCUCG   1   *|=|||||||||||*|||||||= targets:180   UCUACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:23   UGGUGAGCUGGGGGUCCAGCUCG   1   ||||||||||||||*|||||||= targets:89   ACCACUCGACCCCCUGGUCGAGU   111 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:23   UGGUGAGCUGGGGGUCCAGCUCG   1   |||||||||||*||||||||||= targets:448   ACCACUCGACCACCAGGUCGAGU   470 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:23   UGGUGAGCUGGGGGUCCAGCUCG   1   ||||||||||||||*|||||||= targets:123   ACCACUCGACCCCCUGGUCGAGU   145 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:23   UGGUGAGCUGGGGGUCCAGCUCG   1   |||||||||||||*||||||||= targets:853   ACCACUCGACCCCGAGGUCGAGU   875 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183193.1	ncRNA:23   UGGUGAGCUGGGGGUCCAGCUCG   1   ||||||||||||||*|||||||= targets:498   ACCACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:23   UGGUGAGCUGGGGGUCCAGCUCG   1   ||||||||||||||*|||||||= targets:498   ACCACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:23   UGGUGAGCUGGGGGUCCAGCUCG   1   |=||||||||||||*|||||||= targets:1570   AUCACUCGACCCCCUGGUCGAGU   1592 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:23   UGGUGAGCUGGGGGUCCAGCUCG   1   |=|||||||||||*||||||||= targets:1616   AUCACUCGACCCCGAGGUCGAGU   1638 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget