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BaseInfo

ncRNA ID novel_egu_miR289
Species Elaeis guineensis
Class miRNA
Genome position Chr12:9910911-9910981 [+]
Reference genome EG5
Source SRR5189967
Length 20
Mature sequence(if miRNA) 1 - ACUUGAGAGUGGGAGGCAAC - 20
Stem-loop(if miRNA) --AC     AG  -      AACU    A   AAAU
    UUGAG  UG GGAGGC    GUUG GGU    U
    |||||  || ||||||    |||| |||
    AGCUU  GC CCUCUG    CAGC CCA    C
GCUC     CA  A      GUUU    C   GUUA
Stem-loop sequence ACUUGAGAGUGGGAGGCAACUGUUGAGGUAAAUUCAUUGACCCCGACUUUGGUCUCCACGACUUCGACUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010932065.1
ncRNA:20   CAACGGAGGGUGAGAGUUCA   1
  **|||||||||||||=||||
targets:307   CCUGCCUCCCACUCUUAAGU   326

2.5 PREDICTED: Elaeis guineensis zinc-finger homeodomain protein 4-like (LOC105051563), mRNA NA coding protein psRNATarget
GBSV01007256.1
ncRNA:20   CAACGGAGGGUGAGAGUUCA   1
  **|||||||||||||=||||
targets:312   CCUGCCUCCCACUCUUAAGU   331

2.5 TSA: Elaeis guineensis CL2486.Contig1_All transcribed RNA sequence NA coding protein psRNATarget