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BaseInfo

ncRNA ID novel_egu_miR264
Species Elaeis guineensis
Class miRNA
Genome position Chr10:576080-576217 [-]
Reference genome EG5
Source SRR5189967
Length 24
Mature sequence(if miRNA) 115 - UUUUUUUUGGUUGAUCGGGCCACC - 138
Stem-loop(if miRNA) ---        G  U         ACCA UGAGCGACCUCCGACACCCCCAUCGGCACGUGCCGAUGGCCG
   UUUUUUUU GU GAUCGGGCC    G                                          C
   |||||||| || |||||||||    |                                          C
   GGGAAGGG UA CUAGCCUGG    G                                          A
GAG        G  -         ---G GAGGGGUAGGGGGGGGAGGAGGGGUGGUCGUCGAGGCACGAU
Stem-loop sequence UUUUUUUUGGUUGAUCGGGCCACCAGUGAGCGACCUCCGACACCCCCAUCGGCACGUGCCGAUGGCCGCCAUAGCACGGAGCUGCUGGUGGGGAGGAGGGGGGGGAUGGGGAGGGGGUCCGAUCAUGGGGAAGGGGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01027677.1
ncRNA:24   CCAC-CGGGCUAGUUGGUUUUUUUU   1
  *|||-|||||*||*|||||||||||
targets:7   AGUGCGCCCGCUCUACCAAAAAAAA   31

2.5 TSA: Elaeis guineensis Unigene9510_All transcribed RNA sequence NA coding protein psRNATarget
XM_010940695.2
ncRNA:24   CCAC-CGGGCUAGUUGGUUUUUUUU   1
  *|||-|||||*||*|||||||||||
targets:26   AGUGCGCCCGCUCUACCAAAAAAAA   50

2.5 PREDICTED: Elaeis guineensis NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (LOC105057959), mRNA NA coding protein psRNATarget