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BaseInfo

ncRNA ID novel_egu_miR258
Species Elaeis guineensis
Class miRNA
Genome position Chr9:7321752-7321853 [+]
Reference genome EG5
Source SRR5189967
Length 19
Mature sequence(if miRNA) 84 - AGAUUUGAUCUAUUGCAUG - 102
Stem-loop(if miRNA) UCAAA     G     U     C  A       UUAAAUUUU   UU    A
     GUAAU AGAUC GAUCU AU UUUAUUU         AAA  AUAU U
     ||||| ||||| ||||| || |||||||         |||  ||||
     CGUUA UCUAG UUAGA UA GGAUGGG         UUU  UAUG A
--GUA     -     U     U  -       UUCAAGUCU   UU    U
Stem-loop sequence UCAAAGUAAUGAGAUCUGAUCUCAUAUUUAUUUUUAAAUUUUAAAUUAUAUAUAUGUAUUUUUUUCUGAACUUGGGUAGGAUUAGAUUUGAUCUAUUGCAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010944617.1
ncRNA:19   GUACGUUAUCUAGUUUAGA   1
  |||||=|*|||||||||||
targets:597   CAUGCGAGAGAUCAAAUCU   615

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105060777 (LOC105060777), mRNA NA coding protein psRNATarget
XM_010930912.2
ncRNA:19   GUACGUUAUCUAGUUUAGA   1
  =*||*||||||||||||||
targets:1684   UCUGAAAUAGAUCAAAUCU   1702

3.0 PREDICTED: Elaeis guineensis RING-H2 finger protein ATL13-like (LOC105050768), mRNA NA coding protein psRNATarget