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BaseInfo

ncRNA ID novel_egu_miR251
Species Elaeis guineensis
Class miRNA
Genome position Chr9:38044277-38044488 [+]
Reference genome EG5
Source SRR5189967;SRR3042544;SRR3042545;SRR3042547;SRR3042548
Length 24
Mature sequence(if miRNA) 1 - AGAGAAAAUGUAGAGAGAAGGUAG - 24
Stem-loop(if miRNA) ---        UGU          U      U            -                 -                UUCUCUCUUUCCUUCUUUUUUUUUCUAUU
   AGAGAAAA   AGAGAGAAGG AGAGAG GGAGAGAGGAAA GAGAGAGAAAGGAGGGA GAGGAGAGAGAGAAAA                             U
   ||||||||   |||||||||| |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||
   UUUCUUUU   UUUCUUUUUC UUUUUC UCUUUUUCUUUU CUUUUUUUUUCCUUUUU CUUCUUUUUCUUUUUU                             U
UCU        CUU          -      U            U                 U                UCUUUUUGUUUUGUUUUGUUUUGUUUUGU
Stem-loop sequence AGAGAAAAUGUAGAGAGAAGGUAGAGAGUGGAGAGAGGAAAGAGAGAGAAAGGAGGGAGAGGAGAGAGAGAAAAUUCUCUCUUUCCUUCUUUUUUUUUCUAUUUUUGUUUUGUUUUGUUUUGUUUUGUUUUUCUUUUUUUCUUUUUCUUCUUUUUUCCUUUUUUUUUCUUUUUCUUUUUCUUCUUUUUCUUUUUCUUUUUCUUUUCUUUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01047799.1
ncRNA:24   GA--UGGAAGA-GAGAUGUAAAAGAGA   1
  ||--=||||||-|||||||||||||||
targets:69   CUCCGCCUUCUGCUCUACAUUUUCUCU   95

2.0 TSA: Elaeis guineensis Unigene29640_All transcribed RNA sequence NA coding protein psRNATarget
XM_010908148.1
ncRNA:24   GAUGGAAGAGAGAUGUAAAAGAGA   1
  ||-=||*||||||||=||||||||
targets:403   CU-UCUCCUCUCUACGUUUUCUCU   425

2.5 PREDICTED: Elaeis guineensis potassium transporter 26-like (LOC105033386), mRNA NA coding protein psRNATarget
XM_010911311.1
ncRNA:24   GAUGGAAGAGAGAUGUAAAAGAGA   1
  ||-=||*||||||||=||||||||
targets:272   CU-UCUCCUCUCUACGUUUUCUCU   294

2.5 PREDICTED: Elaeis guineensis potassium transporter 26-like (LOC105035672), mRNA NA coding protein psRNATarget