Search result

BaseInfo

ncRNA ID	novel_egu_miR241
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr8:39102301-39102381 [-]
Reference genome	EG5
Source	SRR5189967;SRR3042544;SRR3042545;SRR3042542;SRR3042547;SRR3042548
Length	21
Mature sequence(if miRNA)	61 - CAGCCAAGGAUGACUUGCCGG - 81
Stem-loop(if miRNA)	--C         UG      C   AUUAACCCAAAC     G    AGCCAAGGA  ACUUGC GGC            GAAGA C    |||||||||  |||||| |||            |||||    UCGGUUCCU  UGGACG CUG            CUUUU C ACA         GU      A   ---GUAAUCGAC     C
Stem-loop sequence	CAGCCAAGGAUGACUUGCCGGCAUUAACCCAAACGAAGAGCCCUUUUCCAGCUAAUGGUCAGCAGGUUGUCCUUGGCUACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010938681.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:1360   CUGGCAAUUCAUCCUUGGCUU   1380 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis nuclear transcription factor Y subunit A-3 (LOC105056468), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010941632.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:1342   CUGGCAAUUCAUCCUUGGCUU   1362 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis nuclear transcription factor Y subunit A-3 (LOC105058646), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_010941629.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:1414   CUGGCAAUUCAUCCUUGGCUU   1434 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis nuclear transcription factor Y subunit A-3 (LOC105058646), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010938679.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:1347   CUGGCAAUUCAUCCUUGGCUU   1367 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis nuclear transcription factor Y subunit A-3 (LOC105056468), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010941630.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:1490   CUGGCAAUUCAUCCUUGGCUU   1510 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis nuclear transcription factor Y subunit A-3 (LOC105058646), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019855240.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   |=|||||*||||||||||||* targets:2208   CUGGCAAUUCAUCCUUGGCUU   2228 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis nuclear transcription factor Y subunit A-3 (LOC105058646), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JO094801.1	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   **|||||*||||||||||||* targets:287   AAGGCAAUUCAUCCUUGGCUU   307 Target Full Sequence	2.0	TSA: Elaeis guineensis isotig07566.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
XM_010909408.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   **|||||*||||||||||||* targets:1749   AAGGCAAUUCAUCCUUGGCUU   1769 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis nuclear transcription factor Y subunit A-10-like (LOC105034307), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010909407.2	ncRNA:21   GGCCGUUCAGUAGGAACCGAC   1   **|||||*||||||||||||* targets:1752   AAGGCAAUUCAUCCUUGGCUU   1772 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis nuclear transcription factor Y subunit A-10-like (LOC105034307), transcript variant X1, mRNA	NA	coding protein	psRNATarget