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BaseInfo

ncRNA ID novel_egu_miR237
Species Elaeis guineensis
Class miRNA
Genome position Chr7:26578075-26578158 [+]
Reference genome EG5
Source SRR5189967
Length 24
Mature sequence(if miRNA) 61 - AGGAUCUUGAAGAAGUGAGAGGGC - 84
Stem-loop(if miRNA) --      -     AGUU        GAUUU    UCA     U A
  UUUCUU CUUCU    GGAUUCUA     UAGA   AGUGC C U
  |||||| |||||    ||||||||     ||||   ||||| |
  GGAGAG GAAGA    UCUAGGAU     AUCU   UCACG G U
CG      U     -AGU        ---AU    ---     U U
Stem-loop sequence UUUCUUCUUCUAGUUGGAUUCUAGAUUUUAGAUCAAGUGCUCAUUUGUGCACUUCUAUAUAGGAUCUUGAAGAAGUGAGAGGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JO089014.1
ncRNA:24   CGGGAGAGUGAAGAAGUUCUAGGA   1
  |==||||||*||||||||||||||
targets:1089   GUUCUCUCAGUUCUUCAAGAUCCU   1112

1.0 TSA: Elaeis guineensis isotig01761.Elguifruit mRNA sequence NA coding protein psRNATarget
JO089013.1
ncRNA:24   CGGGAGAGUGAAGAAGUUCUAGGA   1
  |==||||||*||||||||||||||
targets:1089   GUUCUCUCAGUUCUUCAAGAUCCU   1112

1.0 TSA: Elaeis guineensis isotig01760.Elguifruit mRNA sequence NA coding protein psRNATarget
JO089016.1
ncRNA:24   CGGGAGAGUGAAGAAGUUCUAGGA   1
  |==||||||*||||||||||||||
targets:987   GUUCUCUCAGUUCUUCAAGAUCCU   1010

1.0 TSA: Elaeis guineensis isotig01763.Elguifruit mRNA sequence NA coding protein psRNATarget
JO089015.1
ncRNA:24   CGGGAGAGUGAAGAAGUUCUAGGA   1
  |==||||||*||||||||||||||
targets:987   GUUCUCUCAGUUCUUCAAGAUCCU   1010

1.0 TSA: Elaeis guineensis isotig01762.Elguifruit mRNA sequence NA coding protein psRNATarget