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BaseInfo

ncRNA ID novel_egu_miR231
Species Elaeis guineensis
Class miRNA
Genome position Chr7:21332953-21333020 [-]
Reference genome EG5
Source SRR5189967;SRR3042544;SRR3042542;SRR3042548
Length 19
Mature sequence(if miRNA) 50 - AGAAGAGAGAGAGUACAGC - 68
Stem-loop(if miRNA) --           A           ------    AU
  AGAAGAGAGAG GUACAGCUCAU      UCUC  G
  ||||||||||| |||||||||||      ||||
  UCUUCUCUCUC CAUGUCGAGUA      GGAG  A
CU           C           UAGUGG    AU
Stem-loop sequence AGAAGAGAGAGAGUACAGCUCAUUCUCAUGAUAGAGGGGUGAUAUGAGCUGUACCCUCUCUCUUCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010915611.2
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  |||||=|||||||||||||
targets:1086   GCUGUGCUCUCUCUCUUCU   1104

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 17 (LOC105039459), mRNA NA coding protein psRNATarget
XM_010945247.2
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  |||||=|||||||||||||
targets:1047   GCUGUGCUCUCUCUCUUCU   1065

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105061255), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010945249.2
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  |||||=|||||||||||||
targets:1033   GCUGUGCUCUCUCUCUUCU   1051

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105061255), transcript variant X3, mRNA NA coding protein psRNATarget
XM_010945248.2
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  |||||=|||||||||||||
targets:1016   GCUGUGCUCUCUCUCUUCU   1034

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105061255), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010945250.2
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  |||||=|||||||||||||
targets:1012   GCUGUGCUCUCUCUCUUCU   1030

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105061255), transcript variant X4, mRNA NA coding protein psRNATarget
XM_010930141.2
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  |||||=|||||||||||||
targets:903   GCUGUGCUCUCUCUCUUCU   921

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105050210), mRNA NA coding protein psRNATarget
GBSV01026229.1
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  |||||=|||||||||||||
targets:226   GCUGUGCUCUCUCUCUUCU   244

1.0 TSA: Elaeis guineensis Unigene8059_All transcribed RNA sequence NA coding protein psRNATarget
XM_010919253.2
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  *||||=|||||||||||||
targets:1824   ACUGUGCUCUCUCUCUUCU   1842

2.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 18 (LOC105042144), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010919254.2
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  *||||=|||||||||||||
targets:1666   ACUGUGCUCUCUCUCUUCU   1684

2.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 18 (LOC105042144), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010927850.2
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  |||*|=|||||||||||||
targets:69   GCUCUGCUCUCUCUCUUCU   87

2.0 PREDICTED: Elaeis guineensis ERAD-associated E3 ubiquitin-protein ligase component HRD3 (LOC105048527), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010927851.2
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  |||*|=|||||||||||||
targets:70   GCUCUGCUCUCUCUCUUCU   88

2.0 PREDICTED: Elaeis guineensis ERAD-associated E3 ubiquitin-protein ligase component HRD3 (LOC105048527), transcript variant X2, mRNA NA coding protein psRNATarget
XM_019847074.1
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  |||||*|||||*|||||||
targets:27   GCUGUCCUCUCCCUCUUCU   45

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105034708 (LOC105034708), mRNA NA coding protein psRNATarget
XM_010914652.2
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  |||*||*||||||||||||
targets:133   GCUAUAGUCUCUCUCUUCU   151

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105038765 (LOC105038765), mRNA NA coding protein psRNATarget
GBSV01025161.1
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  |||||*|||||*|||||||
targets:37   GCUGUCCUCUCCCUCUUCU   55

2.5 TSA: Elaeis guineensis Unigene6990_All transcribed RNA sequence NA coding protein psRNATarget
XM_010914718.2
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  *=|||=|||||||||||||
targets:2177   AUUGUGCUCUCUCUCUUCU   2195

3.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 16 (LOC105038812), mRNA NA coding protein psRNATarget
XM_010929438.2
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  *=|||=|||||||||||||
targets:1921   AUUGUGCUCUCUCUCUUCU   1939

3.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 16 (LOC105049697), mRNA NA coding protein psRNATarget
XM_010928539.2
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  *=|||=|||||||||||||
targets:1855   AUUGUGCUCUCUCUCUUCU   1873

3.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 16 (LOC105049005), mRNA NA coding protein psRNATarget
XM_010930530.2
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  **|||=|||||||||||||
targets:854   AGUGUGCUCUCUCUCUUCU   872

3.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105050485), mRNA NA coding protein psRNATarget
XM_010921288.2
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  |=*||=|||||||||||||
targets:1040   GUCGUGCUCUCUCUCUUCU   1058

3.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 7 (LOC105043657), mRNA NA coding protein psRNATarget
GBSV01028385.1
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  |=*||=|||||||||||||
targets:347   GUCGUGCUCUCUCUCUUCU   365

3.0 TSA: Elaeis guineensis Unigene10218_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01007629.1
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  *|||*|||||||||||||*
targets:2788   UCUGAACUCUCUCUCUUCA   2806

3.0 TSA: Elaeis guineensis CL2620.Contig3_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01007627.1
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  *|||*|||||||||||||*
targets:2581   UCUGAACUCUCUCUCUUCA   2599

3.0 TSA: Elaeis guineensis CL2620.Contig1_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01026165.1
ncRNA:19   CGACAUGAGAGAGAGAAGA   1
  **|*|||||||||||||||
targets:171   UAUAUACUCUCUCUCUUCU   189

3.0 TSA: Elaeis guineensis Unigene7995_All transcribed RNA sequence NA coding protein psRNATarget
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