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BaseInfo

ncRNA ID novel_egu_miR219
Species Elaeis guineensis
Class miRNA
Genome position Chr1:32079570-32079644 [-]
Reference genome EG5
Source SRR3042542
Length 24
Mature sequence(if miRNA) 52 - AUUUUCUGUGAAUAUAUAUGGCUU - 75
Stem-loop(if miRNA) --AUUU   G         A   C   C         A
      UCU UGAAUAUAU UGG UUU UGUGAAUAU U
      ||| ||||||||| ||| ||| |||||||||
      AGA ACUUGUAUA AUU AAA ACACUUGUA A
ACUGAU   G         -   U   A         U
Stem-loop sequence AUUUUCUGUGAAUAUAUAUGGCUUUCUGUGAAUAUAUAUAUGUUCACAAAAAUUUAAUAUGUUCAGAGAUAGUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019853611.1
ncRNA:24   UUC--GGUAUAUAUAAGUGUCUUUUA   1
  =||--||||=|||||||*||||||||
targets:2436   GAGUUCCAUGUAUAUUCUCAGAAAAU   2461

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105038292 (LOC105038292), transcript variant X3, mRNA NA coding protein psRNATarget
XM_010914056.2
ncRNA:24   UUC--GGUAUAUAUAAGUGUCUUUUA   1
  =||--||||=|||||||*||||||||
targets:2658   GAGUUCCAUGUAUAUUCUCAGAAAAU   2683

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105038292 (LOC105038292), transcript variant X1, mRNA NA coding protein psRNATarget