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BaseInfo

ncRNA ID novel_egu_miR214
Species Elaeis guineensis
Class miRNA
Genome position Chr6:23883599-23883732 [-]
Reference genome EG5
Source SRR5189967;SRR3042542;SRR3042544;SRR5189964
Length 21
Mature sequence(if miRNA) 1 - UUAAGCAACAACUCGAAGAUU - 21
Stem-loop(if miRNA) --    -      -AA        U       ---    AGA    AA     A   CUUUAUCAACCACUG
  UCUU GAGUUG   CUUAAUUU AUAGUAU   AGCA   AGUA  ACUCC UAG               A
  |||| ||||||   |||||||| |||||||   ||||   ||||  ||||| |||
  AGAA CUCAAC   GAAUUAGA UAUCAUA   UCGU   UUAU  UGAGG GCG               G
UU    G      AAC        -       AAC    --A    --     G   UCGUUGUAUAAAUCG
Stem-loop sequence UCUUGAGUUGAACUUAAUUUUAUAGUAUAGCAAGAAGUAAAACUCCAUAGCUUUAUCAACCACUGAGGCUAAAUAUGUUGCUGCGGGGAGUUAUUAUGCUCAAAUACUAUAGAUUAAGCAACAACUCGAAGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01031789.1
ncRNA:21   UUAGAAGCUCAACAACGAAUU   1
  |=|||||||||||||||||||
targets:99   AGUCUUCGAGUUGUUGCUUAA   119

0.0 TSA: Elaeis guineensis Unigene13622_All transcribed RNA sequence NA coding protein psRNATarget