ncRNA ID | novel_egu_miR213 |
Species | Elaeis guineensis |
Class | miRNA |
Genome position | Chr6:34964232-34964416 [-] |
Reference genome | EG5 |
Source | SRR5189967 |
Length | 24 |
Mature sequence(if miRNA) | 162 - UUUGAAAAUUCUGAAUGACGAAAA - 185 |
Stem-loop(if miRNA) |
--          C       C         C  C      -                UC    -A          C   C  CGUUAAAAU    A U   UUUGAAAAUU UGAAUGA GAAAAUAUC CU CUCUUU AAAAAAAUUAUGACAU  UAUG  UAUAUUAUGA AUU UG         UAUG C U   |||||||||| ||||||| ||||||||| || |||||| ||||||||||||||||  ||||  |||||||||| ||| ||         |||| | C   AAACUUUUAA ACUUACU CUUUUAUAG GA GAGAAA UUUUUUUAAUACUGUA  AUAU  AUAUAAUACU UAA AC         AUAC G C GC          A       A         A  U      C                GA    AG          A   U  ---------    - U |
Stem-loop sequence | UUUGAAAAUUCUGAAUGACGAAAAUAUCCCUCCUCUUUAAAAAAAUUAUGACAUUCUAUGAUAUAUUAUGACAUUCUGCGUUAAAAUUAUGACUUCCUGCAUACAUAAUAUCAUAAUAUAGAUAUAAGAUGUCAUAAUUUUUUUCAAAGAGUAGAGAUAUUUUCAUCAUUCAAAAUUUUCAAACG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_010944413.2 |
|
2.5 | PREDICTED: Elaeis guineensis E3 ubiquitin-protein ligase SINAT2-like (LOC105060627), mRNA | NA | coding protein | psRNATarget |