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BaseInfo

ncRNA ID novel_egu_miR213
Species Elaeis guineensis
Class miRNA
Genome position Chr6:34964232-34964416 [-]
Reference genome EG5
Source SRR5189967
Length 24
Mature sequence(if miRNA) 162 - UUUGAAAAUUCUGAAUGACGAAAA - 185
Stem-loop(if miRNA) --          C       C         C  C      -                UC    -A          C   C  CGUUAAAAU    A U
  UUUGAAAAUU UGAAUGA GAAAAUAUC CU CUCUUU AAAAAAAUUAUGACAU  UAUG  UAUAUUAUGA AUU UG         UAUG C U
  |||||||||| ||||||| ||||||||| || |||||| ||||||||||||||||  ||||  |||||||||| ||| ||         |||| | C
  AAACUUUUAA ACUUACU CUUUUAUAG GA GAGAAA UUUUUUUAAUACUGUA  AUAU  AUAUAAUACU UAA AC         AUAC G C
GC          A       A         A  U      C                GA    AG          A   U  ---------    - U
Stem-loop sequence UUUGAAAAUUCUGAAUGACGAAAAUAUCCCUCCUCUUUAAAAAAAUUAUGACAUUCUAUGAUAUAUUAUGACAUUCUGCGUUAAAAUUAUGACUUCCUGCAUACAUAAUAUCAUAAUAUAGAUAUAAGAUGUCAUAAUUUUUUUCAAAGAGUAGAGAUAUUUUCAUCAUUCAAAAUUUUCAAACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010944413.2
ncRNA:24   AAAAGCAGUAAGUCUUAAAAGUUU   1
  ***||*||||||||||||*|||||
targets:1885   ACAUCAUCAUUCAGAAUUCUCAAA   1908

2.5 PREDICTED: Elaeis guineensis E3 ubiquitin-protein ligase SINAT2-like (LOC105060627), mRNA NA coding protein psRNATarget