Search result

BaseInfo

ncRNA ID	ath-miRf10870-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	25
Mature sequence(if miRNA)	NA - CUACUCGACCAGGUGGUCGAGUGGU - NA
Stem-loop(if miRNA)	-CU          AG     C      UCU   G   GUC   CUACUCGACC  GUGGU GAGUGG   CUU AGA |||   ||||||||||  ||||| ||||||   ||| ||U CAG   GGUGAGCUGG  CACCA CUCAUC   GAA UUC    UUU          GG     A      CUC   G
Stem-loop sequence	GUCCUCUACUCGACCAGGUGGUCGAGUGGUCUCUUGAGAUCUUGAAGCUCCUACUCAACCACGGGGUCGAGUGGUUUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069808.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   |||||||||||*||||||||||||| targets:89   ACCACUCGACCCCCUGGUCGAGUAG   113 Target Full Sequence	1.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   |||||||||||*||||||||||||| targets:123   ACCACUCGACCCCCUGGUCGAGUAG   147 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   |||||||||||*||||||||||||| targets:498   ACCACUCGACCCCCUGGUCGAGUAG   522 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   |||||||||||*||||||||||||| targets:498   ACCACUCGACCCCCUGGUCGAGUAG   522 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   |=|||||||||*||||||||||||| targets:1570   AUCACUCGACCCCCUGGUCGAGUAG   1594 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   ||||||||||||||*|||||||||| targets:448   ACCACUCGACCACCAGGUCGAGUAG   472 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   =||||||||||*||||||||||||* targets:229   GCCACUCGACCCCCUGGUCGAGUAU   253 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   *|=||||||||*||||||||||||* targets:180   UCUACUCGACCCCCUGGUCGAGUAU   204 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   =||||||||||*||||||||||||* targets:229   GCCACUCGACCCCCUGGUCGAGUAU   253 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   *|=||||||||*||||||||||||* targets:180   UCUACUCGACCCCCUGGUCGAGUAU   204 Target Full Sequence	2.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   |==||*|||||*||||||||||||* targets:582   AUUACYCGACCCCCUGGUCGAGUAU   606 Target Full Sequence	2.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT025674.1	ncRNA:25   UGG--UGAGCUGGUGGACCAGCUCAUC   1   |||--||||||||*||||||||||||* targets:305   ACCUUACUCGACCCCCUGGUCGAGUAU   331 Target Full Sequence	2.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
EF183192.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   |=|||||||||||||*||||||||* targets:262   AUCACUCGACCACCUUGUCGAGUAU   286 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   |=|||||||||||||*||||||||* targets:637   AUCACUCGACCACCUUGUCGAGUAU   661 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   |=|||||||||||||*||||||||* targets:637   AUCACUCGACCACCUUGUCGAGUAU   661 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   |||||||||||*|*||||||||||| targets:488   ACCACUCGACCCCGUGGUCGAGUAG   512 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   |||||||||||*||*|||||||||| targets:1103   ACCACUCGACCCCCAGGUCGAGUAG   1127 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
AY227642.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   ||||||||||*|||*|||||||||| targets:807   ACCACUCGACAACCAGGUCGAGUAG   831 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
BT014714.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   ===||||*|||*||||||||||||* targets:300   GUUACUCAACCCCCUGGUCGAGUAU   324 Target Full Sequence	3.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:25   UGGUGAGCUGGUGGACCAGCUCAUC   1   ===||||*|||*||||||||||||* targets:300   GUUACUCAACCCCCUGGUCGAGUAU   324 Target Full Sequence	3.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget