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BaseInfo

ncRNA ID novel_egu_miR209
Species Elaeis guineensis
Class miRNA
Genome position Chr5:28670429-28670489 [+]
Reference genome EG5
Source SRR5189967
Length 24
Mature sequence(if miRNA) 1 - AGAGAUUUCUGAAUGUUGGAGAUG - 24
Stem-loop(if miRNA) --AGA          U       A G   GA
     GAUUUCUGAA GUUGGAG U GAA  U
     |||||||||| ||||||| | |||
     CUAAGGAUUU CGAUCUU A UUU  C
AAGUA          -       G G   AA
Stem-loop sequence AGAGAUUUCUGAAUGUUGGAGAUGGAAGAUCAAUUUGAGUUCUAGCUUUAGGAAUCAUGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019850130.1
ncRNA:24   GUAGAGGUUGUAAGUCUUUAGAGA   1
  *||=*=||=||||||||||||||*
targets:3870   GAUUGUCAGCAUUCAGAAAUCUCC   3893

3.0 PREDICTED: Elaeis guineensis ABC transporter C family member 5-like (LOC105043189), transcript variant X2, mRNA NA coding protein psRNATarget
XM_019850129.1
ncRNA:24   GUAGAGGUUGUAAGUCUUUAGAGA   1
  *||=*=||=||||||||||||||*
targets:3976   GAUUGUCAGCAUUCAGAAAUCUCC   3999

3.0 PREDICTED: Elaeis guineensis ABC transporter C family member 5-like (LOC105043189), transcript variant X1, mRNA NA coding protein psRNATarget
XM_019850131.1
ncRNA:24   GUAGAGGUUGUAAGUCUUUAGAGA   1
  *||=*=||=||||||||||||||*
targets:4058   GAUUGUCAGCAUUCAGAAAUCUCC   4081

3.0 PREDICTED: Elaeis guineensis ABC transporter C family member 5-like (LOC105043189), transcript variant X3, mRNA NA coding protein psRNATarget