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BaseInfo

ncRNA ID novel_egu_miR203
Species Elaeis guineensis
Class miRNA
Genome position Chr5:3896870-3896942 [-]
Reference genome EG5
Source SRR5189967
Length 21
Mature sequence(if miRNA) 53 - UCGCAGGAGAGAUGAUGCCGU - 73
Stem-loop(if miRNA) --    A  AG            G -   CCGA   CU
  UCGC GG  AGAUGAUGCCGU G CCG    UGG  C
  |||| ||  |||||||||||| | |||    |||
  AGCG CC  UCUACUACGGCA C GGC    ACC  C
GA    G  CU            G A   --CA   CA
Stem-loop sequence UCGCAGGAGAGAUGAUGCCGUGGCCGCCGAUGGCUCCACCCAACCGGACGACGGCAUCAUCUUCCCGGCGAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01017402.1
ncRNA:21   UGCCGUAGUAGAGAGGACGCU   1
  ||||==|||||||||||||||
targets:190   ACGGUGUCAUCUCUCCUGCGA   210

2.0 TSA: Elaeis guineensis CL6599.Contig2_All transcribed RNA sequence NA coding protein psRNATarget
XM_019848215.1
ncRNA:21   UGCCGUAGUAGAGAGGACGCU   1
  ||||==|||||||||||||||
targets:112   ACGGUGUCAUCUCUCCUGCGA   132

2.0 PREDICTED: Elaeis guineensis calcium-transporting ATPase 8, plasma membrane-type (LOC105039309), transcript variant X2, mRNA NA coding protein psRNATarget
XM_019848214.1
ncRNA:21   UGCCGUAGUAGAGAGGACGCU   1
  ||||==|||||||||||||||
targets:112   ACGGUGUCAUCUCUCCUGCGA   132

2.0 PREDICTED: Elaeis guineensis calcium-transporting ATPase 8, plasma membrane-type (LOC105039309), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010930398.2
ncRNA:21   UGCCGUAGUAGAGAGGACGCU   1
  ||||==|||||||||||||||
targets:349   ACGGUGUCAUCUCUCCUGCGA   369

2.0 PREDICTED: Elaeis guineensis calcium-transporting ATPase 8, plasma membrane-type-like (LOC105050400), transcript variant X1, mRNA NA coding protein psRNATarget
JO096466.1
ncRNA:21   UGCCGUAGUAGAGAGGACGCU   1
  *||*|||||||||*|||||||
targets:186   UCGACAUCAUCUCCCCUGCGA   206

2.5 TSA: Elaeis guineensis isotig09239.Elguifruit mRNA sequence NA coding protein psRNATarget
XM_010928964.2
ncRNA:21   UGCCGUAGUAGAGAGGACGCU   1
  =*||==||||||||||||||=
targets:245   GAGGUGUCAUCUCUCCUGCGG   265

3.0 PREDICTED: Elaeis guineensis calcium-transporting ATPase 8, plasma membrane-type (LOC105049341), mRNA NA coding protein psRNATarget