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BaseInfo

ncRNA ID novel_egu_miR194
Species Elaeis guineensis
Class miRNA
Genome position Chr5:44723491-44723590 [-]
Reference genome EG5
Source SRR5189967;SRR3042542;SRR3042547;SRR5189964
Length 21
Mature sequence(if miRNA) 80 - AAGCUCAGGAGGGAUAGCGCC - 100
Stem-loop(if miRNA) --          G         CA       ---U    --AG   -AC  CA
  AAGCUCAGGA GGAUAGCGC  UGGAUGA    AACA    GGG   CG  A
  |||||||||| |||||||||  |||||||    ||||    |||   ||
  UUUGAGUCCU UCUAUCGCG  AUCUACU    UUGU    CUC   GC  A
AU          A         UA       UGCC    AAAA   GAA  AG
Stem-loop sequence AAGCUCAGGAGGGAUAGCGCCAUGGAUGAUAACAAGGGGACCGCAAAGACGAAGCUCAAAAUGUUCCGUUCAUCUAAUGCGCUAUCUAUCCUGAGUUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010942161.2
ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1
  |||*||||=||||||||||||
targets:810   GGCUCUAUUCCUCCUGAGCUU   830

2.5 PREDICTED: Elaeis guineensis probable LRR receptor-like serine/threonine-protein kinase At1g63430 (LOC105059029), mRNA NA coding protein psRNATarget
GBSV01030049.1
ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1
  **|*|||||||||||*|||||
targets:227   AUCCCUAUCCCUCCUCAGCUU   247

2.5 TSA: Elaeis guineensis Unigene11882_All transcribed RNA sequence NA coding protein psRNATarget
XM_010906573.2
ncRNA:21   CCGCGAUAGGGAGGACUCGAA   1
  **|*|||||||||||*|||||
targets:234   AUCCCUAUCCCUCCUCAGCUU   254

2.5 PREDICTED: Elaeis guineensis aspartyl protease family protein 2-like (LOC105032195), mRNA NA coding protein psRNATarget