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BaseInfo

ncRNA ID novel_egu_miR191
Species Elaeis guineensis
Class miRNA
Genome position Chr5:46892452-46892515 [-]
Reference genome EG5
Source SRR5189967
Length 21
Mature sequence(if miRNA) 1 - UUUCUAUUUUUUGUUCUUCGG - 21
Stem-loop(if miRNA) --    --UU                U   AUA
  GAAG    GGAAAUGGAAAAGGCC AUG   A
  ||||    |||||||||||||||| |||
  CUUC    UUUUUAUCUUUUCCGG UAC   G
GG    UUGU                U   CUG
Stem-loop sequence GAAGUUGGAAAUGGAAAAGGCCUAUGAUAAGGUCCAUUGGCCUUUUCUAUUUUUUGUUCUUCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01023260.1
ncRNA:21   GGCUUCUUGUUUUUUAUCUUU   1
  **|||||||||||||*|||||
targets:980   AAGAAGAACAAAAAAAAGAAA   1000

1.5 TSA: Elaeis guineensis Unigene5089_All transcribed RNA sequence NA coding protein psRNATarget
XM_010943817.2
ncRNA:21   GGCUUCUUGUUUUUUAUCUUU   1
  **|||||||||||||*|||||
targets:1567   AAGAAGAACAAAAAAAAGAAA   1587

1.5 PREDICTED: Elaeis guineensis CHD3-type chromatin-remodeling factor PICKLE (LOC105060208), mRNA NA coding protein psRNATarget
XM_019854161.1
ncRNA:21   GGCU-UCUUGUUUUUUAUCUUU   1
  *=||-||||||||||||||||=
targets:2798   AUGAGAGAACAAAAAAUAGAAG   2819

3.0 PREDICTED: Elaeis guineensis lysine-specific demethylase JMJ25-like (LOC105055437), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010937247.2
ncRNA:21   GGCU-UCUUGUUUUUUAUCUUU   1
  *=||-||||||||||||||||=
targets:3793   AUGAGAGAACAAAAAAUAGAAG   3814

3.0 PREDICTED: Elaeis guineensis lysine-specific demethylase JMJ25-like (LOC105055437), transcript variant X1, mRNA NA coding protein psRNATarget
GBSV01045807.1
ncRNA:21   GGCUUCUUGUUUUUUAUCUUU   1
  ***|||==|||||||||||||
targets:183   AAAAAGGGCAAAAAAUAGAAA   203

3.0 TSA: Elaeis guineensis Unigene27648_All transcribed RNA sequence NA coding protein psRNATarget