Search result

BaseInfo

ncRNA ID novel_egu_miR188
Species Elaeis guineensis
Class miRNA
Genome position Chr1:53543534-53543654 [+]
Reference genome EG5
Source SRR5189967
Length 24
Mature sequence(if miRNA) 1 - AGUUUAAAAAUAGUGAAGUCGGCA - 24
Stem-loop(if miRNA) --     A A                  C     G                -A    GUUU
  AGUUU A AAUAGUGAAGUCGGCAAU GAUUU CCGGCUUCACUAUUUC  AAUU    U
  ||||| | |||||||||||||||||| ||||| ||||||||||||||||  ||||
  UCAGA U UUAUCACUUCAGUUGUUA CUAAA GGCUGAAGUGAUAAAG  UUAA    A
UU     C A                  U     A                AG    AAAA
Stem-loop sequence AGUUUAAAAAUAGUGAAGUCGGCAAUCGAUUUGCCGGCUUCACUAUUUCAAAUUGUUUUAAAAAAAUUGAGAAAUAGUGAAGUCGGAAAAUCUAUUGUUGACUUCACUAUUAUCAGACUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01032467.1
ncRNA:24   ACGGCUGAAGUGAUAAAAAUUUGA   1
  |*||*||||||||||||||||||*
targets:240   UUCCAACUUCACUAUUUUUAAACA   263

1.0 TSA: Elaeis guineensis Unigene14300_All transcribed RNA sequence NA coding protein psRNATarget
JO098880.1
ncRNA:24   ACGGCUGAAGUGAUAAAAAUUUGA   1
  |*||*||||||||||||||||||*
targets:162   UUCCAACUUCACUAUUUUUAAACA   185

1.0 TSA: Elaeis guineensis isotig11653.Elguifruit mRNA sequence NA coding protein psRNATarget