ncRNA ID | novel_egu_miR188 |
Species | Elaeis guineensis |
Class | miRNA |
Genome position | Chr1:53543534-53543654 [+] |
Reference genome | EG5 |
Source | SRR5189967 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGUUUAAAAAUAGUGAAGUCGGCA - 24 |
Stem-loop(if miRNA) |
--     A A                  C     G                -A    GUUU   AGUUU A AAUAGUGAAGUCGGCAAU GAUUU CCGGCUUCACUAUUUC  AAUU    U   ||||| | |||||||||||||||||| ||||| ||||||||||||||||  ||||   UCAGA U UUAUCACUUCAGUUGUUA CUAAA GGCUGAAGUGAUAAAG  UUAA    A UU     C A                  U     A                AG    AAAA |
Stem-loop sequence | AGUUUAAAAAUAGUGAAGUCGGCAAUCGAUUUGCCGGCUUCACUAUUUCAAAUUGUUUUAAAAAAAUUGAGAAAUAGUGAAGUCGGAAAAUCUAUUGUUGACUUCACUAUUAUCAGACUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GBSV01032467.1 |
|
1.0 | TSA: Elaeis guineensis Unigene14300_All transcribed RNA sequence | NA | coding protein | psRNATarget | |||||||||
JO098880.1 |
|
1.0 | TSA: Elaeis guineensis isotig11653.Elguifruit mRNA sequence | NA | coding protein | psRNATarget |