Search result

BaseInfo

ncRNA ID	ath-miRf10866-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - CCACUCGACCCCCUGGUCGAGUA - NA
Stem-loop(if miRNA)	-     C        CCCU        A    ACUUCUC   UUCAUCAUAUCACUCUACCUCGAGGUCGAG  GAGAC ACUCGACC    GGUCGAGU GAGG       GAU                              U  ||||| ||||||||    |||||||| ||||       |||  UUCUG UGAGCUGG    CCAGCUCA CUCC       CUA                              G C     -        AACC        -    ------A   GCUCACCACCAGUCCACUACCUCUACUUCU
Stem-loop sequence	GAGACCACUCGACCCCCUGGUCGAGUAGAGGACUUCUCGAUUUCAUCAUAUCACUCUACCUCGAGGUCGAGUGUCUUCAUCUCCAUCACCUGACCACCACUCGAUCACCUCACUCGACCCCAAGGUCGAGUGUCUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183311.1	ncRNA:23   AUGAGCUGGUCCCCCAGCUCACC   1   ||||||||||||||||||||||| targets:436   UACUCGACCAGGGGGUCGAGUGG   458 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_5275 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183005.1	ncRNA:23   AUGAGCUGGUCCCCCAGCUCACC   1   *|||||||||*|||||||||||| targets:1924   CACUCGACCACGGGGUCGAGUGG   1946 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence	NA	coding protein	psRNATarget
Y11156.1	ncRNA:23   AUGAGCUGGUCCCCCAGCUCACC   1   ****=||*||||||||||||||* targets:133   GUGAUGAACAGGGGGUCGAGUGU   155 Target Full Sequence	3.0	A.thaliana mRNA for hypothetical protein, partial (2019 bp)	NA	coding protein	psRNATarget
NM_001341078.1	ncRNA:23   AUGAGCUGGUCCCCCAGCUCACC   1   ****=||*||||||||||||||* targets:2104   GUGAUGAACAGGGGGUCGAGUGU   2126 Target Full Sequence	3.0	Arabidopsis thaliana binding protein mRNA	binding protein(AT4G15890)	coding protein	psRNATarget
NM_117681.3	ncRNA:23   AUGAGCUGGUCCCCCAGCUCACC   1   ****=||*||||||||||||||* targets:2209   GUGAUGAACAGGGGGUCGAGUGU   2231 Target Full Sequence	3.0	Arabidopsis thaliana binding protein mRNA	binding protein(AT4G15890)	coding protein	psRNATarget