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BaseInfo

ncRNA ID novel_egu_miR164
Species Elaeis guineensis
Class miRNA
Genome position Chr3:4159294-4159412 [+]
Reference genome EG5
Source SRR5189967
Length 24
Mature sequence(if miRNA) 1 - AGAGAAAAUGUAGAGAGAAGGUAG - 24
Stem-loop(if miRNA) --        U U          --U            -                CUCUCAU
  AGAGAAAA G AGAGAGAAGG   AGAGAGAGGAGG GAGGAAAGAGAGAGAA       U
  |||||||| | ||||||||||   |||||||||||| ||||||||||||||||
  UUUCUUUU C UUUUUCUUCC   UCUUUUUCUUUU CUUUUUUUUUUUUCUU       A
UU        - -          UUU            U                UUUUUUU
Stem-loop sequence AGAGAAAAUGUAGAGAGAAGGUAGAGAGAGGAGGGAGGAAAGAGAGAGAACUCUCAUUAUUUUUUUUUCUUUUUUUUUUUUCUUUUUCUUUUUCUUUUCCUUCUUUUUCUUUUCUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01047799.1
ncRNA:24   GA--UGGAAGA-GAGAUGUAAAAGAGA   1
  ||--=||||||-|||||||||||||||
targets:69   CUCCGCCUUCUGCUCUACAUUUUCUCU   95

2.0 TSA: Elaeis guineensis Unigene29640_All transcribed RNA sequence NA coding protein psRNATarget
XM_010908148.1
ncRNA:24   GAUGGAAGAGAGAUGUAAAAGAGA   1
  ||-=||*||||||||=||||||||
targets:403   CU-UCUCCUCUCUACGUUUUCUCU   425

2.5 PREDICTED: Elaeis guineensis potassium transporter 26-like (LOC105033386), mRNA NA coding protein psRNATarget
XM_010911311.1
ncRNA:24   GAUGGAAGAGAGAUGUAAAAGAGA   1
  ||-=||*||||||||=||||||||
targets:272   CU-UCUCCUCUCUACGUUUUCUCU   294

2.5 PREDICTED: Elaeis guineensis potassium transporter 26-like (LOC105035672), mRNA NA coding protein psRNATarget