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BaseInfo

ncRNA ID novel_egu_miR163
Species Elaeis guineensis
Class miRNA
Genome position Chr3:25552466-25552644 [+]
Reference genome EG5
Source SRR5189967
Length 19
Mature sequence(if miRNA) 161 - UUAAAUGAAAAAGUCGAUC - 179
Stem-loop(if miRNA) --              A          A            C C     C          --------------------                - AUA
  UUGGCUUUUUCGUU GAAAAUUUUG AUGAUAAAAAUA C UUAUU UUUAGAAAAA                    AUUAUGAUAUCUUGCG C   U
  |||||||||||||| |||||||||| |||||||||||| | ||||| ||||||||||                    |||||||||||||||| |
  AGCUGAAAAAGUAA UUUUUAAAAC UACUGUUUUUAU G GAUAA AAAUUUUUUU                    UAAUACUGUAGGACGC G   U
CU              A          A            A A     A          AAUACUAUAAAAUAUAAAUA                A GUA
Stem-loop sequence UUGGCUUUUUCGUUAGAAAAUUUUGAAUGAUAAAAAUACCCUUAUUCUUUAGAAAAAAUUAUGAUAUCUUGCGCAUAUUAUGGACGCAGGAUGUCAUAAUAUAAAUAUAAAAUAUCAUAAUUUUUUUAAAAAAUAGAGAUAUUUUUGUCAUACAAAAUUUUUAAAUGAAAAAGUCGAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010941411.1
ncRNA:19   CUAGCUGAAAAAGUAAAUU   1
  *|||||*||||||||||||
targets:1260   UAUCGAGUUUUUCAUUUAA   1278

2.5 PREDICTED: Elaeis guineensis protein DMR6-LIKE OXYGENASE 2 (LOC105058466), mRNA NA coding protein psRNATarget