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BaseInfo

ncRNA ID novel_egu_miR161
Species Elaeis guineensis
Class miRNA
Genome position Chr3:26120271-26120329 [-]
Reference genome EG5
Source SRR5189967
Length 19
Mature sequence(if miRNA) 1 - UAUCGAUUUUGCAUCAUUC - 19
Stem-loop(if miRNA) --    C UG UGA          C   U
  GUGA G  G   UGAUAAAACG CAU C
  |||| |  |   |||||||||| ||| A
  UACU C  U   GCUAUUUUGU GUA A
CU    A GU UUA          A   A
Stem-loop sequence GUGACGUGGUGAUGAUAAAACGCCAUUCAAAAUGAUGUUUUAUCGAUUUUGCAUCAUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01027306.1
ncRNA:19   CUUACUACGUUUUAGCUAU   1
  *||||||||||||||||||
targets:126   CAAUGAUGCAAAAUCGAUA   144

1.0 TSA: Elaeis guineensis Unigene9138_All transcribed RNA sequence NA coding protein psRNATarget
JO096780.1
ncRNA:19   CUUACUACGUUUUAGCUAU   1
  *||||||||||||||||||
targets:331   CAAUGAUGCAAAAUCGAUA   349

1.0 TSA: Elaeis guineensis isotig09553.Elguifruit mRNA sequence NA coding protein psRNATarget
XM_010907900.2
ncRNA:19   CUUACUACGUUUUAGCUAU   1
  *||||||||||||||||||
targets:1549   CAAUGAUGCAAAAUCGAUA   1567

1.0 PREDICTED: Elaeis guineensis carnosine N-methyltransferase (LOC105033202), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010907891.2
ncRNA:19   CUUACUACGUUUUAGCUAU   1
  *||||||||||||||||||
targets:1579   CAAUGAUGCAAAAUCGAUA   1597

1.0 PREDICTED: Elaeis guineensis carnosine N-methyltransferase (LOC105033202), transcript variant X1, mRNA NA coding protein psRNATarget