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BaseInfo

ncRNA ID	novel_egu_miR149
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr3:59602242-59602367 [+]
Reference genome	EG5
Source	SRR5189964;SRR3042544;SRR3042545
Length	20
Mature sequence(if miRNA)	107 - UAGGGUUUAGGGUUUAGGGA - 126
Stem-loop(if miRNA)	--UUA   UU                  G     GG AUAGG      UA   UG  G  AGG      GGG  UUGAAUUUUGGAUUUAGG UUUUG  U     GUUUUG  CUU  GG UU   G      |||  |||||||||||||||||| |||||  |     ||||||  |||  || ||      UUU  GAUUUGGGAUUUAGGUUU GGGAU  G     UAGGAU  GAG  UU GG   U AGGGA   GG                  A     UU GGAUA      UG   GU  G  AUU
Stem-loop sequence	UUAGGGUUUUGAAUUUUGGAUUUAGGGUUUUGGGUAUAGGGUUUUGUACUUUGGGGUUAGGGUUUAGGGUUUGGAGGUUAGGAUAUAGGGUUUAGGGAUUUGGAUUUAGGGUUUAGGGUUUAGGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010917149.2	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   *|||*||||||||||||||| targets:224   CCCCGAAACCCUAAACCCUA   243 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis serine/threonine-protein phosphatase 5 (LOC105040568), mRNA	NA	coding protein	psRNATarget
GBSV01037283.1	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   *|*||||||||||||||||| targets:122   ACACUAAACCCUAAACCCUA   141 Target Full Sequence	1.0	TSA: Elaeis guineensis Unigene19119_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010915958.2	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   *=|||||||||||||||||* targets:218   AUCCUAAACCCUAAACCCUU   237 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis pentatricopeptide repeat-containing protein At1g79490, mitochondrial (LOC105039704), mRNA	NA	coding protein	psRNATarget
XM_010923139.2	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   ||=|||||||||||=||||| targets:88   UCUCUAAACCCUAAGCCCUA   107 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105044999 (LOC105044999), mRNA	NA	coding protein	psRNATarget
GBSV01013707.1	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   ||=|||||||||||=||||| targets:63   UCUCUAAACCCUAAGCCCUA   82 Target Full Sequence	2.5	TSA: Elaeis guineensis CL4993.Contig1_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010929843.2	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   |=||||||||||||||||*| targets:98   UUCCUAAACCCUAAACCCCA   117 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis ribonuclease Z, chloroplastic (LOC105050004), transcript variant X1, mRNA	NA	coding protein	psRNATarget
GBSV01009488.1	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   |=||||||||||||||||*| targets:86   UUCCUAAACCCUAAACCCCA   105 Target Full Sequence	2.5	TSA: Elaeis guineensis CL3323.Contig1_All transcribed RNA sequence	NA	coding protein	psRNATarget
GBSV01009489.1	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   |=||||||||||||||||*| targets:74   UUCCUAAACCCUAAACCCCA   93 Target Full Sequence	2.5	TSA: Elaeis guineensis CL3323.Contig2_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010942294.1	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   |||||||||||*|||||||= targets:88   UCCCUAAACCCAAAACCCUG   107 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis peptidyl-prolyl cis-trans isomerase CYP19-3 (LOC105059095), transcript variant X1, mRNA	NA	coding protein	psRNATarget
GBSV01026008.1	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   |||||||||||*|||||||= targets:5   UCCCUAAACCCAAAACCCUG   24 Target Full Sequence	2.5	TSA: Elaeis guineensis Unigene7838_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010939870.1	ncRNA:20   AGGGA--UUUGGGAUUUGGGAU   1   *||||--||||||||||||||| targets:92   CCCCUGCAAACCCUAAACCCUA   113 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC105057294), mRNA	NA	coding protein	psRNATarget
XM_019854561.1	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   *||=|||||||||||*|||| targets:162   ACCUUAAACCCUAAAGCCUA   181 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis G patch domain-containing protein TGH homolog (LOC105056309), transcript variant X5, mRNA	NA	coding protein	psRNATarget
JO099470.1	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   |*|||||||||*|||||||| targets:695   UGCCUAAACCCCAAACCCUA   714 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig12243.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
GBSV01046462.1	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   |*|||||||||*|||||||| targets:172   UGCCUAAACCCCAAACCCUA   191 Target Full Sequence	2.5	TSA: Elaeis guineensis Unigene28303_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010907784.2	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   |==|*||||||||||||||| targets:346   UUUCGAAACCCUAAACCCUA   365 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis protein DETOXIFICATION 42-like (LOC105033120), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019851062.1	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   |||=*||||||||||||||* targets:203   UCCUCAAACCCUAAACCCUU   222 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis protein arginine methyltransferase NDUFAF7, mitochondrial (LOC105047715), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019851063.1	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   |||=*||||||||||||||* targets:203   UCCUCAAACCCUAAACCCUU   222 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis protein arginine methyltransferase NDUFAF7, mitochondrial (LOC105047715), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_019851064.1	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   |||=*||||||||||||||* targets:203   UCCUCAAACCCUAAACCCUU   222 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis protein arginine methyltransferase NDUFAF7, mitochondrial (LOC105047715), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_019851065.1	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   |||=*||||||||||||||* targets:203   UCCUCAAACCCUAAACCCUU   222 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis protein arginine methyltransferase NDUFAF7, mitochondrial (LOC105047715), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_010926763.2	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   |||=*||||||||||||||* targets:272   UCCUCAAACCCUAAACCCUU   291 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis protein arginine methyltransferase NDUFAF7, mitochondrial (LOC105047715), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_010926766.2	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   |||=*||||||||||||||* targets:272   UCCUCAAACCCUAAACCCUU   291 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis protein arginine methyltransferase NDUFAF7, mitochondrial (LOC105047715), transcript variant X7, mRNA	NA	coding protein	psRNATarget
GBSV01029482.1	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   |||=*||||||||||||||* targets:209   UCCUCAAACCCUAAACCCUU   228 Target Full Sequence	3.0	TSA: Elaeis guineensis Unigene11315_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_019847434.1	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   ||||*=|||||||||||||* targets:51   UCCCAGAACCCUAAACCCUC   70 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis uncharacterized LOC105035766 (LOC105035766), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010911459.2	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   ||||*=|||||||||||||* targets:54   UCCCAGAACCCUAAACCCUC   73 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis uncharacterized LOC105035766 (LOC105035766), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010911457.2	ncRNA:20   AGGGAUUUGGGAUUUGGGAU   1   ||||*=|||||||||||||* targets:50   UCCCAGAACCCUAAACCCUC   69 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis uncharacterized LOC105035766 (LOC105035766), transcript variant X1, mRNA	NA	coding protein	psRNATarget