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BaseInfo

ncRNA ID novel_egu_miR141
Species Elaeis guineensis
Class miRNA
Genome position Chr2:12094703-12094756 [+]
Reference genome EG5
Source SRR5189964
Length 24
Mature sequence(if miRNA) 1 - ACUCCGGAAGAACUCCAUACUGAA - 24
Stem-loop(if miRNA) --        A      CA      AU
  ACUCCGGA GAACUC  UACUGA  C
  |||||||| ||||||  ||||||  U
  UGAGGCCU CUUGAG  GUGACU  U
AC        A      -A      AU
Stem-loop sequence ACUCCGGAAGAACUCCAUACUGAAUCUUUAUCAGUGAGAGUUCAUCCGGAGUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01009484.1
ncRNA:24   AAGUCAUACCUCAAGAAGGCCUCA   1
  |||||||||||||||*||||||||
targets:263   UUCAGUAUGGAGUUCCUCCGGAGU   286

1.5 TSA: Elaeis guineensis CL3322.Contig1_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01022288.1
ncRNA:24   AAGU----CAUACCUCAAGAAGGCCUCA   1
  ||||----|*||||=||||||||||||*
targets:73   UUCAUCGAGAAUGGGGUUCUUCCGGAGG   100

3.0 TSA: Elaeis guineensis Unigene4116_All transcribed RNA sequence NA coding protein psRNATarget
XM_010942930.1
ncRNA:24   AAGU----CAUACCUCAAGAAGGCCUCA   1
  ||||----|*||||=||||||||||||*
targets:139   UUCAUCGAGAAUGGGGUUCUUCCGGAGG   166

3.0 PREDICTED: Elaeis guineensis uncharacterized LOC105059586 (LOC105059586), mRNA NA coding protein psRNATarget