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BaseInfo

ncRNA ID novel_egu_miR129
Species Elaeis guineensis
Class miRNA
Genome position Chr16:18192800-18192914 [-]
Reference genome EG5
Source SRR5189964;SRR5189967
Length 24
Mature sequence(if miRNA) 92 - GAGAGAAAAUGUAGAGAGAAGGUA - 115
Stem-loop(if miRNA) --         UGU          U        G            A           A
  GAGAGAAAA   AGAGAGAAGG AAAGAGAG AAAGAGAGAGAA GGAGAGAGAGG G
  |||||||||   |||||||||| |||||||| |||||||||||| |||||||||||
  UUUUCUUUU   UUUCUUUUUC UUUUUCUC UUUCUUUUUUUU CCUUUCUCUUU A
UU         UUU          -        -            -           U
Stem-loop sequence GAGAGAAAAUGUAGAGAGAAGGUAAAGAGAGGAAAGAGAGAGAAAGGAGAGAGAGGAGAUUUUCUCUUUCCUUUUUUUUCUUUCUCUUUUUCUUUUUCUUUUUUUUUUCUUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01047799.1
ncRNA:24   AUGGAAGA-GAGAUGUAAAAGAGAG   1
  *=||||||-||||||||||||||||
targets:72   CGCCUUCUGCUCUACAUUUUCUCUC   96

2.0 TSA: Elaeis guineensis Unigene29640_All transcribed RNA sequence NA coding protein psRNATarget
XM_010910260.2
ncRNA:24   AUGG-AAGAGAGAUGUAAAAGAGAG   1
  |*|=-||=|||=||||||||||||=
targets:5016   UUCUGUUUUCUUUACAUUUUCUCUU   5040

3.0 PREDICTED: Elaeis guineensis callose synthase 3-like (LOC105034926), mRNA NA coding protein psRNATarget