Search result

BaseInfo

ncRNA ID novel_egu_miR120
Species Elaeis guineensis
Class miRNA
Genome position Chr15:16041203-16041280 [-]
Reference genome EG5
Source SRR5189964;SRR3042542;SRR3042544;SRR3042545;SRR3042547;SRR3042548
Length 20
Mature sequence(if miRNA) 1 - UGAAGUGUUUGGGGGAACUC - 20
Stem-loop(if miRNA) --                  U    --CCGUUC     AA
  GUUCCCUCAGACACUUCA UAGG        UCUUC  U
  |||||||||||||||||| ||||        |||||
  CAAGGGGGUUUGUGAAGU AUCC        AGAGG  A
CU                  C    UAAAUACC     AU
Stem-loop sequence GUUCCCUCAGACACUUCAUUAGGCCGUUCUCUUCAAUAUAGGAGACCAUAAAUCCUACUGAAGUGUUUGGGGGAACUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019848862.1
ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1
  |||||||=||||||||||||
targets:767   GAGUUCCUCCAAACACUUCA   786

1.5 PREDICTED: Elaeis guineensis ATP sulfurylase 1, chloroplastic-like (LOC105042220), mRNA NA coding protein psRNATarget
XM_010927955.2
ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1
  ||||||=||||||*||||||
targets:312   GAGUUCUCCCAAAGACUUCA   331

2.5 PREDICTED: Elaeis guineensis low affinity sulfate transporter 3 (LOC105048606), transcript variant X1, mRNA NA coding protein psRNATarget
GBSV01019820.1
ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1
  *=|||||*||||||||||||
targets:2830   AGGUUCCACCAAACACUUCA   2849

2.5 TSA: Elaeis guineensis Unigene1648_All transcribed RNA sequence NA coding protein psRNATarget