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BaseInfo

ncRNA ID novel_egu_miR110
Species Elaeis guineensis
Class miRNA
Genome position Chr4:15833538-15833641 [-]
Reference genome EG5
Source SRR3042542;SRR5189967;SRR3042544;SRR3042545;SRR3042547;SRR3042548
Length 21
Mature sequence(if miRNA) 84 - UGGAAGGGACAUGCAGAGGUG - 104
Stem-loop(if miRNA) --    A   A      G   -UGAG   AAGAA  A      G -AA     G
  UGGA GGG CAUGCA AGG     GCC     AG GAGAAG G   AGAUG U
  |||| ||| |||||| |||     |||     || |||||| |   ||||| U
  ACCU CUC GUACGU UCC     CGG     UC CUCUUC U   UCUAC C
CC    C   C      G   UUAAA   --AAG  -      G AAC     U
Stem-loop sequence UGGAAGGGACAUGCAGAGGUGAGGCCAAGAAAGAGAGAAGGGAAAGAUGGUUCUCAUCUCAAUGCUUCUCCUGAAGGCAAAUUCCUGUGCAUGCCUCCUCCACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01011781.1
ncRNA:21   GUGGAGACGUACAGGGAAGGU   1
  **||||||||||||*||||||
targets:489   GUCCUCUGCAUGUCACUUCCA   509

1.5 TSA: Elaeis guineensis CL4220.Contig1_All transcribed RNA sequence NA coding protein psRNATarget
XM_010941147.2
ncRNA:21   GUGGAGACGUACAGGGAAGGU   1
  *|||*|||||*||||||||||
targets:184   AACCACUGCAAGUCCCUUCCA   204

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105058264 (LOC105058264), mRNA NA coding protein psRNATarget
GBSV01028536.1
ncRNA:21   GUGGAGACGUACAGGGAAGGU   1
  |*||||*|||||||||*||||
targets:364   CCCCUCCGCAUGUCCCCUCCA   384

2.5 TSA: Elaeis guineensis Unigene10369_All transcribed RNA sequence NA coding protein psRNATarget
XM_010923284.2
ncRNA:21   GUGGAGACGUACAGGGAAGGU   1
  |*||||*|||||||||*||||
targets:262   CCCCUCCGCAUGUCCCCUCCA   282

2.5 PREDICTED: Elaeis guineensis polyphenol oxidase, chloroplastic-like (LOC105045129), mRNA NA coding protein psRNATarget
XM_010911846.2
ncRNA:21   GUGGAGACGUACAGGGAAGGU   1
  |*||||*|||||||||*||||
targets:202   CCCCUCCGCAUGUCCCCUCCA   222

2.5 PREDICTED: Elaeis guineensis polyphenol oxidase, chloroplastic-like (LOC105036105), mRNA NA coding protein psRNATarget
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