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BaseInfo

ncRNA ID novel_egu_miR100
Species Elaeis guineensis
Class miRNA
Genome position Chr1:20468487-20468651 [+]
Reference genome EG5
Source SRR5189964
Length 24
Mature sequence(if miRNA) 1 - UGAAUGACGAAAAUACCUCUGCUC - 24
Stem-loop(if miRNA) --                C   -GC      AA         G      --    AA                    -  AA UUA
  UGAAUGACGAAAAUAC UCU   UCUUUA  AAAAAAUUA GACAUC  AUGU  CAUAUUAUGACAUCCUGCAU CA  A   U
  |||||||||||||||| |||   ||||||  ||||||||| ||||||  ||||  |||||||||||||||||||| ||  |
  AUUUACUGUUUUUAUG AGA   AGAAAU  UUUUUUAAU CUGUAG  UACA  GUAUAAUACUGUAGGAUGUA GU  U   U
AA                -   AUA      -C         A      AA    -C                    U  GC UCA
Stem-loop sequence UGAAUGACGAAAAUACCUCUGCUCUUUAAAAAAAAAUUAGGACAUCAUGUAACAUAUUAUGACAUCCUGCAUCAAAAUUAUUACUUCGUGUAUGUAGGAUGUCAUAAUAUGCACAUAAGAUGUCAUAAUUUUUUCUAAAGAAUAAGAGUAUUUUUGUCAUUUAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010916423.2
ncRNA:24   CUCGUCUCC-AUAAAAGCAGUAAGU   1
  **|=*||||-||||||||||||||*
targets:162   UCGUUGAGGGUAUUUUCGUCAUUCC   186

3.0 PREDICTED: Elaeis guineensis F-box/LRR-repeat protein 3-like (LOC105040045), mRNA NA coding protein psRNATarget