ncRNA ID | novel_egu_miR100 |
Species | Elaeis guineensis |
Class | miRNA |
Genome position | Chr1:20468487-20468651 [+] |
Reference genome | EG5 |
Source | SRR5189964 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UGAAUGACGAAAAUACCUCUGCUC - 24 |
Stem-loop(if miRNA) |
--                C   -GC      AA         G      --    AA                    -  AA UUA   UGAAUGACGAAAAUAC UCU   UCUUUA  AAAAAAUUA GACAUC  AUGU  CAUAUUAUGACAUCCUGCAU CA  A   U   |||||||||||||||| |||   ||||||  ||||||||| ||||||  ||||  |||||||||||||||||||| ||  |   AUUUACUGUUUUUAUG AGA   AGAAAU  UUUUUUAAU CUGUAG  UACA  GUAUAAUACUGUAGGAUGUA GU  U   U AA                -   AUA      -C         A      AA    -C                    U  GC UCA |
Stem-loop sequence | UGAAUGACGAAAAUACCUCUGCUCUUUAAAAAAAAAUUAGGACAUCAUGUAACAUAUUAUGACAUCCUGCAUCAAAAUUAUUACUUCGUGUAUGUAGGAUGUCAUAAUAUGCACAUAAGAUGUCAUAAUUUUUUCUAAAGAAUAAGAGUAUUUUUGUCAUUUAAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_010916423.2 |
|
3.0 | PREDICTED: Elaeis guineensis F-box/LRR-repeat protein 3-like (LOC105040045), mRNA | NA | coding protein | psRNATarget |