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BaseInfo

ncRNA ID novel_egu_miR94
Species Elaeis guineensis
Class miRNA
Genome position Chr1:16745577-16745627 [+]
Reference genome EG5
Source SRR5189964
Length 24
Mature sequence(if miRNA) 1 - GUUGGGUGGUCUGGAAGUCGACGU - 24
Stem-loop(if miRNA) -GU         U       GA  U
   UGGGUGGUC GGAAGUC  CG C
   ||||||||| |||||||  || G
   ACCUACCAG UCUUCAG  GC U
UCC         -       AA  U
Stem-loop sequence GUUGGGUGGUCUGGAAGUCGACGUCGUUCGAAGACUUCUGACCAUCCACCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01013623.1
ncRNA:24   UGCAGCUGAAGGUCUGGUGGGUUG   1
  |||||||||||||||||=||||||
targets:138   ACGUCGACUUCCAGACCGCCCAAC   161

1.5 TSA: Elaeis guineensis CL4959.Contig1_All transcribed RNA sequence NA coding protein psRNATarget
XM_019847351.1
ncRNA:24   UGCAGCUGAAGGUCUGGUGGGUUG   1
  |=|||||||||||||||=||||||
targets:582   AUGUCGACUUCCAGACCGCCCAAC   605

1.5 PREDICTED: Elaeis guineensis uncharacterized LOC109505143 (LOC109505143), mRNA NA coding protein psRNATarget