Search result

BaseInfo

ncRNA ID novel_egu_miR92
Species Elaeis guineensis
Class miRNA
Genome position Chr1:16083589-16083684 [+]
Reference genome EG5
Source SRR5189964
Length 24
Mature sequence(if miRNA) 73 - GAAGAUCUGUGGAAAGGACAGCAU - 96
Stem-loop(if miRNA) --   U           UU     -------------    -UUUUAU   UUUU
  GCU UCCUUUCCACA  UUUUC             CUCU       UUC    U
  ||| |||||||||||  |||||             ||||       |||
  CGA AGGAAAGGUGU  AGAAG             GAGA       AAG    C
UA   C           CU     CUUUUUUUUUUGU    CUUUCCC   CUUC
Stem-loop sequence GCUUUCCUUUCCACAUUUUUUCCUCUUUUUAUUUCUUUUUCCUUCGAACCCUUUCAGAGUGUUUUUUUUUUCGAAGAUCUGUGGAAAGGACAGCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019850269.1
ncRNA:24   UACGACAGGAAAGGUGUCUAGAAG   1
  =||||*|||||*||||||||||||
targets:98   GUGCUUUCCUUCCCACAGAUCUUC   121

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105044289 (LOC105044289), transcript variant X1, mRNA NA coding protein psRNATarget
XM_019851628.1
ncRNA:24   UACGACAGGAAAGGUGUCUAGAAG   1
  =||||*|||||*||||||||||||
targets:336   GUGCUUUCCUUCCCACAGAUCUUC   359

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105048366 (LOC105048366), transcript variant X3, mRNA NA coding protein psRNATarget
XM_010927666.2
ncRNA:24   UACGACAGGAAAGGUGUCUAGAAG   1
  =||||*|||||*||||||||||||
targets:336   GUGCUUUCCUUCCCACAGAUCUUC   359

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105048366 (LOC105048366), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010927668.2
ncRNA:24   UACGACAGGAAAGGUGUCUAGAAG   1
  =||||*|||||*||||||||||||
targets:336   GUGCUUUCCUUCCCACAGAUCUUC   359

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105048366 (LOC105048366), transcript variant X2, mRNA NA coding protein psRNATarget
GBSV01028404.1
ncRNA:24   UACGACAGGA-AAGGUGUCUAGAAG   1
  *||**|||||-|||||||||||||*
targets:780   UUGAGGUCCUCUUCCACAGAUCUUG   804

3.0 TSA: Elaeis guineensis Unigene10237_All transcribed RNA sequence NA coding protein psRNATarget