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BaseInfo

ncRNA ID novel_egu_miR63
Species Elaeis guineensis
Class miRNA
Genome position Chr10:30467136-30467233 [-]
Reference genome EG5
Source SRR5189964;SRR3042542;SRR5189967;SRR3042544;SRR3042545;SRR3042547;SRR3042548
Length 21
Mature sequence(if miRNA) 1 - UUCGGACCAGGCUUCAUUCCC - 21
Stem-loop(if miRNA) --     UU            GC     --G  U      CACCU  -C   G
  GGAUG  GUCUGGUUCGAA  CGUUC   UG GAAGAG     UC  GAU A
  |||||  ||||||||||||  |||||   || ||||||     ||  |||
  CUUAC  CGGACCAGGCUU  GUAAG   AC CUUCUC     AG  CUA U
CC     UU            UA     GGA  -      ----U  CU   G
Stem-loop sequence GGAUGUUGUCUGGUUCGAAGCCGUUCGUGUGAAGAGCACCUUCCGAUGAUGAUCUCGAUCUCUUCCAAGGGAAUGAUUUCGGACCAGGCUUCAUUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01039797.1
ncRNA:21   CCCUUACUUCGGACCAGGCUU   1
  *||=|||||||||||||||=|
targets:132   CGGGAUGAAGCCUGGUCCGGA   152

2.5 TSA: Elaeis guineensis Unigene21635_All transcribed RNA sequence NA coding protein psRNATarget
XM_010913332.2
ncRNA:21   CCCUUACUUCGGACCAGGCUU   1
  *||=|||||||||||||||=|
targets:346   UGGGAUGAAGCCUGGUCCGGA   366

2.5 PREDICTED: Elaeis guineensis homeobox-leucine zipper protein HOX10-like (LOC105037697), partial mRNA NA coding protein psRNATarget
XM_010922124.2
ncRNA:21   CCCUUACUUCGGACCAGGCUU   1
  *||=|||||||||||||||=|
targets:404   CGGGAUGAAGCCUGGUCCGGA   424

2.5 PREDICTED: Elaeis guineensis homeobox-leucine zipper protein HOX9 (LOC105044293), transcript variant X7, mRNA NA coding protein psRNATarget
XM_010922125.2
ncRNA:21   CCCUUACUUCGGACCAGGCUU   1
  *||=|||||||||||||||=|
targets:546   CGGGAUGAAGCCUGGUCCGGA   566

2.5 PREDICTED: Elaeis guineensis homeobox-leucine zipper protein HOX9 (LOC105044293), transcript variant X6, mRNA NA coding protein psRNATarget
XM_019846375.1
ncRNA:21   CCCUUACUUCGGACCAGGCUU   1
  *||=|||||||||||||||=|
targets:681   UGGGAUGAAGCCUGGUCCGGA   701

2.5 PREDICTED: Elaeis guineensis homeobox-leucine zipper protein HOX32-like (LOC105032628), transcript variant X3, mRNA NA coding protein psRNATarget
XM_010925376.2
ncRNA:21   CCCUUACUUCGGACCAGGCUU   1
  *||=|||||||||||||||=|
targets:835   UGGGAUGAAGCCUGGUCCGGA   855

2.5 PREDICTED: Elaeis guineensis homeobox-leucine zipper protein HOX32 (LOC105046708), mRNA NA coding protein psRNATarget
XM_019850157.1
ncRNA:21   CCCUUACUUCGGACCAGGCUU   1
  *||=|||||||||||||||=|
targets:1032   CGGGAUGAAGCCUGGUCCGGA   1052

2.5 PREDICTED: Elaeis guineensis homeobox-leucine zipper protein HOX9 (LOC105044293), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010907119.2
ncRNA:21   CCCUUACUUCGGACCAGGCUU   1
  *||=|||||||||||||||=|
targets:997   UGGGAUGAAGCCUGGUCCGGA   1017

2.5 PREDICTED: Elaeis guineensis homeobox-leucine zipper protein HOX32-like (LOC105032628), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010922122.2
ncRNA:21   CCCUUACUUCGGACCAGGCUU   1
  *||=|||||||||||||||=|
targets:1353   CGGGAUGAAGCCUGGUCCGGA   1373

2.5 PREDICTED: Elaeis guineensis homeobox-leucine zipper protein HOX9 (LOC105044293), transcript variant X5, mRNA NA coding protein psRNATarget
XM_010907118.2
ncRNA:21   CCCUUACUUCGGACCAGGCUU   1
  *||=|||||||||||||||=|
targets:997   UGGGAUGAAGCCUGGUCCGGA   1017

2.5 PREDICTED: Elaeis guineensis homeobox-leucine zipper protein HOX32-like (LOC105032628), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010922117.2
ncRNA:21   CCCUUACUUCGGACCAGGCUU   1
  *||=|||||||||||||||=|
targets:1200   CGGGAUGAAGCCUGGUCCGGA   1220

2.5 PREDICTED: Elaeis guineensis homeobox-leucine zipper protein HOX9 (LOC105044293), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010922121.2
ncRNA:21   CCCUUACUUCGGACCAGGCUU   1
  *||=|||||||||||||||=|
targets:1353   CGGGAUGAAGCCUGGUCCGGA   1373

2.5 PREDICTED: Elaeis guineensis homeobox-leucine zipper protein HOX9 (LOC105044293), transcript variant X4, mRNA NA coding protein psRNATarget
XM_019853767.1
ncRNA:21   CCCUUACUUCGGACCAGGCUU   1
  *||=|||||||||||||||=|
targets:1583   UGGGAUGAAGCCUGGUCCGGA   1603

2.5 PREDICTED: Elaeis guineensis homeobox-leucine zipper protein HOX9-like (LOC105054510), mRNA NA coding protein psRNATarget
XM_010917108.2
ncRNA:21   CCCUUACUUCGGACCAGGCUU   1
  *||=|||||||||||||||=|
targets:1794   UGGGAUGAAGCCUGGUCCGGA   1814

2.5 PREDICTED: Elaeis guineensis homeobox-leucine zipper protein ATHB-15-like (LOC105040544), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010917107.2
ncRNA:21   CCCUUACUUCGGACCAGGCUU   1
  *||=|||||||||||||||=|
targets:1880   UGGGAUGAAGCCUGGUCCGGA   1900

2.5 PREDICTED: Elaeis guineensis homeobox-leucine zipper protein ATHB-15-like (LOC105040544), transcript variant X1, mRNA NA coding protein psRNATarget
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