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BaseInfo

ncRNA ID	ath-miRf10855-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - AGAGUGUCGGCGAUGGCGAGGAU - NA
Stem-loop(if miRNA)	C  ---  A     U     A           UAGU   CU   UCUGUUC   AU      ---    C  A    -    UC     UGUCUUUGCUCCAUGA CGG GA   GG GAGUG CGGCG UGGCGAGGAUA    CAG  GCG       GGG  GGGUCA   GCUU GC UGCA CGGA  GCAAA                A ||| ||   || ||||| ||||| |||||||||||    |||  |||       |||  ||||||   |||| || |||| ||||  |||||                A GCC CU   CC UUCGC GCCGC GCCGCUCUUAU    GUC  CGC       CUC  UCUAGU   CGAA CG AUGU GCCU  CUUCG                G    U  AUA  A     U     C           ---U   -U   -------   CG      CAA    -  -    A    --     AGAACCGAAGUUCACU
Stem-loop sequence	CGGCGAGGAGAGUGUCGGCGAUGGCGAGGAUAUAGUCAGCUGCGUCUGUUCGGGAUGGGUCAGCUUCGCAUGCACGGAUCGCAAAUGUCUUUGCUCCAUGAAAGUCACUUGAAGCCAAGAGCUUCUCCGAUGUAGCAAGCAACUGAUCUGCCUCCGCUCUGUUAUUCUCGCCGCCGCCGUCGCUUACCAUAUCUCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_120991.3	ncRNA:23   UAGGAGCGGUAGCGGCUGUGAGA   1   ||||||||||||||||||||||| targets:337   AUCCUCGCCAUCGCCGACACUCU   359 Target Full Sequence	0.0	Arabidopsis thaliana Chaperone DnaJ-domain superfamily protein mRNA	Chaperone DnaJ-domain superfamily protein(AT5G09540)	coding protein	psRNATarget
BX833328.1	ncRNA:23   UAGGAGCGGUAGCGGCUGUGAGA   1   ||||||||||||||||||||||| targets:158   AUCCUCGCCAUCGCCGACACUCU   180 Target Full Sequence	0.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL44ZH01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT030004.1	ncRNA:23   UAGGAGCGGUAGCGGCUGUGAGA   1   ||||||||||||||||||||||| targets:160   AUCCUCGCCAUCGCCGACACUCU   182 Target Full Sequence	0.0	Arabidopsis thaliana At5g09540 mRNA, complete cds	NA	coding protein	psRNATarget
NM_104975.3	ncRNA:23   UAGGAGCGGUAGCGGCUGUGAGA   1   |||||||||=||||=|||||||| targets:258   AUCCUCGCCGUCGCUGACACUCU   280 Target Full Sequence	2.5	Arabidopsis thaliana Chaperone DnaJ-domain superfamily protein mRNA	Chaperone DnaJ-domain superfamily protein(AT1G62970)	coding protein	psRNATarget
NM_001334056.1	ncRNA:23   UAGGAGCGGUAGCGGCUGUGAGA   1   |||||||||=||||=|||||||| targets:272   AUCCUCGCCGUCGCUGACACUCU   294 Target Full Sequence	2.5	Arabidopsis thaliana Chaperone DnaJ-domain superfamily protein mRNA	Chaperone DnaJ-domain superfamily protein(AT1G62970)	coding protein	psRNATarget
AK228669.1	ncRNA:23   UAGGAGCGGUAGCGGCUGUGAGA   1   |||||||||=||||=|||||||| targets:213   AUCCUCGCCGUCGCUGACACUCU   235 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-02-H20	NA	coding protein	psRNATarget