ncRNA ID | novel_egu_miR61 |
Species | Elaeis guineensis |
Class | miRNA |
Genome position | Chr1:37471460-37471662 [-] |
Reference genome | EG5 |
Source | SRR5189964 |
Length | 24 |
Mature sequence(if miRNA) | 180 - GAUUCUGAUCACGAACCAAACGCU - 203 |
Stem-loop(if miRNA) |
--      GA C                -A    A            A     G    CAAGC    C                            -   U   A   GAUUCU  U ACGAACCAAACGCUUC  GAGA UUUGGCUAUUCC AUUCC AUUU     CAUU UGAUUUUGGUUGCGAACCAAGCACCUCC CAG GUA C   ||||||  | ||||||||||||||||  |||| |||||||||||| ||||| ||||     |||| |||||||||||||||||||||||||||| ||| ||| A   CUAAGG  A UGUUUGGUUUGCGAAG  CUCU AAACCGGUAAGG UAAGG UAAG     GUAA GCUAAAGCCAACGCUUGGUUUGUGGGGG GUC UAU A AG      UC A                CC    -            C     G    ----A    A                            A   -   G |
Stem-loop sequence | GAUUCUGAUCACGAACCAAACGCUUCAGAGAAUUUGGCUAUUCCAAUUCCGAUUUCAAGCCAUUCUGAUUUUGGUUGCGAACCAAGCACCUCCCAGUGUAACAAGUAUCUGAGGGGGUGUUUGGUUCGCAACCGAAAUCGAAAUGAGAAUGGGAAUCGGAAUGGCCAAAUCUCCCGAAGCGUUUGGUUUGUAACUGGAAUCGA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_019851676.1 |
|
2.5 | PREDICTED: Elaeis guineensis transcription factor bHLH30-like (LOC105048737), mRNA | NA | coding protein | psRNATarget |