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BaseInfo

ncRNA ID novel_egu_miR61
Species Elaeis guineensis
Class miRNA
Genome position Chr1:37471460-37471662 [-]
Reference genome EG5
Source SRR5189964
Length 24
Mature sequence(if miRNA) 180 - GAUUCUGAUCACGAACCAAACGCU - 203
Stem-loop(if miRNA) --      GA C                -A    A            A     G    CAAGC    C                            -   U   A
  GAUUCU  U ACGAACCAAACGCUUC  GAGA UUUGGCUAUUCC AUUCC AUUU     CAUU UGAUUUUGGUUGCGAACCAAGCACCUCC CAG GUA C
  ||||||  | ||||||||||||||||  |||| |||||||||||| ||||| ||||     |||| |||||||||||||||||||||||||||| ||| ||| A
  CUAAGG  A UGUUUGGUUUGCGAAG  CUCU AAACCGGUAAGG UAAGG UAAG     GUAA GCUAAAGCCAACGCUUGGUUUGUGGGGG GUC UAU A
AG      UC A                CC    -            C     G    ----A    A                            A   -   G
Stem-loop sequence GAUUCUGAUCACGAACCAAACGCUUCAGAGAAUUUGGCUAUUCCAAUUCCGAUUUCAAGCCAUUCUGAUUUUGGUUGCGAACCAAGCACCUCCCAGUGUAACAAGUAUCUGAGGGGGUGUUUGGUUCGCAACCGAAAUCGAAAUGAGAAUGGGAAUCGGAAUGGCCAAAUCUCCCGAAGCGUUUGGUUUGUAACUGGAAUCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019851676.1
ncRNA:24   UCGC--------AAACCAAGCACUAGUCUUAG   1
  *|||--------|||*|||||*||||||||||
targets:931   UGCGCCAUCUAAUUUAGUUCGAGAUCAGAAUC   962

2.5 PREDICTED: Elaeis guineensis transcription factor bHLH30-like (LOC105048737), mRNA NA coding protein psRNATarget