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BaseInfo

ncRNA ID novel_egu_miR59
Species Elaeis guineensis
Class miRNA
Genome position Chr1:41123010-41123101 [-]
Reference genome EG5
Source SRR5189964;SRR3042542;SRR5189967;SRR3042544;SRR3042545;SRR3042547;SRR3042548
Length 21
Mature sequence(if miRNA) 72 - UGAAGCUGCCAGCAUGAUCUA - 92
Stem-loop(if miRNA) --   A    - -C             UU         AAAAC    U
  UGA GCUG C  AGCAUGAUCUAGC  UGAAUGACU     AAUA C
  ||| |||| |  |||||||||||||  |||||||||     ||||
  ACU CGAC G  UCGUACUGGAUCG  ACUUACUGA     UUAU C
UC   C    A UC             UU         --AUA    A
Stem-loop sequence UGAAGCUGCCAGCAUGAUCUAGCUUUGAAUGACUAAAACAAUAUCCAUAUUAUAAGUCAUUCAUUGCUAGGUCAUGCUCUGACAGCCUCACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01051399.1
ncRNA:21   AUCUAGUACGACCGUCGAAGU   1
  *||||||||||||||||||||
targets:173   CAGAUCAUGCUGGCAGCUUCA   193

0.0 TSA: Elaeis guineensis Unigene33241_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01033415.1
ncRNA:21   AUCUAGUACGACCGUCGAAGU   1
  *||||||||||||||||||||
targets:333   CAGAUCAUGCUGGCAGCUUCA   353

0.0 TSA: Elaeis guineensis Unigene15248_All transcribed RNA sequence NA coding protein psRNATarget
GBSV01019847.1
ncRNA:21   AUCUAGUACGACCGUCGAAGU   1
  *=*||=|||||||||||||||
targets:1004   CGUAUUAUGCUGGCAGCUUCA   1024

2.0 TSA: Elaeis guineensis Unigene1675_All transcribed RNA sequence NA coding protein psRNATarget