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BaseInfo

ncRNA ID novel_egu_miR58
Species Elaeis guineensis
Class miRNA
Genome position Chr12:12299370-12299422 [+]
Reference genome EG5
Source SRR5189964
Length 24
Mature sequence(if miRNA) 1 - UCGGUGGCUGCUUCUGGACGGCAU - 24
Stem-loop(if miRNA) --       C   UU    A    AUA
  UCGGUGG UGC  CUGG CGGC   G
  ||||||| |||  |||| ||||   G
  GGUCGCC ACG  GGCC GCCG   G
GC       -   UU    -    CGU
Stem-loop sequence UCGGUGGCUGCUUCUGGACGGCAUAGGGUGCGCCGCCGGUUGCACCGCUGGCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01007683.1
ncRNA:24   UACGGCAGGUCUUCGUCGGUGGCU   1
  |||||*|||||=||||||||||||
targets:246   AUGCCUUCCAGGAGCAGCCACCGA   269

2.5 TSA: Elaeis guineensis CL2640.Contig2_All transcribed RNA sequence NA coding protein psRNATarget
XM_010916871.2
ncRNA:24   UACGGCAGGUCUUCGUCGGUGGCU   1
  *|*||||||||||||||||=|||*
targets:542   UUACCGUCCAGAAGCAGCCGCCGC   565

2.5 PREDICTED: Elaeis guineensis 17.3 kDa class II heat shock protein-like (LOC105040381), mRNA NA coding protein psRNATarget