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BaseInfo

ncRNA ID novel_egu_miR53
Species Elaeis guineensis
Class miRNA
Genome position Chr1:48100229-48100297 [-]
Reference genome EG5
Source SRR5189964;SRR5189967
Length 24
Mature sequence(if miRNA) 1 - AAUAUCAGAUCGAGUACACAGCAU - 24
Stem-loop(if miRNA) --  C  --G       -       -----    U   A
  GC UG   AUUCGAU UGAUAUU     UGCU GUG G
  || ||   ||||||| |||||||     |||| ||| A
  CG AC   UGAGCUA ACUAUAA     AUGA CAC C
UA  -  ACA       G       UAGGA    -   U
Stem-loop sequence GCCUGGAUUCGAUUGAUAUUUGCUUGUGAGACUCACAGUAAGGAUAAUAUCAGAUCGAGUACACAGCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JO092601.1
ncRNA:24   UACGACACAUGAGCUAGACUAUAA   1
  *|||**||||||=|||||||||||
targets:454   UUGCCCUGUACUUGAUCUGAUAUU   477

2.5 TSA: Elaeis guineensis isotig05347.Elguifruit mRNA sequence NA coding protein psRNATarget