Search result

BaseInfo

ncRNA ID	novel_egu_miR50
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr1:9980167-9980234 [+]
Reference genome	EG5
Source	SRR5189964;SRR3042547
Length	23
Mature sequence(if miRNA)	1 - AGAGAGAGAAGGAGAGCCAGGAA - 23
Stem-loop(if miRNA)	A      GA   -          AA UA        GAGAGA  AGG AGAGCCAGGA  G  GAGCUAA  ||||||  ||| ||||||||||  |  ||||||A  CUCUCU  UUC UCUCGGUUCU  C  CUCGAUC G      GG   A          -- GC
Stem-loop sequence	AGAGAGAGAAGGAGAGCCAGGAAAGUAGAGCUAAACUAGCUCCGCUCUUGGCUCUACUUGGUCUCUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010937328.2	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   *||||*||||||||||||||||| targets:92   AUCCUUGCUCUCCUUCUCUCUCU   114 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis probable polyol transporter 4 (LOC105055490), mRNA	NA	coding protein	psRNATarget
XM_010912853.2	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   **==|||||||||||||*||||| targets:145   GCUUUGGCUCUCCUUCUAUCUCU   167 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis IAA-amino acid hydrolase ILR1-like 1 (LOC105037126), mRNA	NA	coding protein	psRNATarget
GBSV01033233.1	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   |||||**|||||||||||||||| targets:1395   UUCCUCUCUCUCCUUCUCUCUCU   1417 Target Full Sequence	2.0	TSA: Elaeis guineensis Unigene15066_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_019849512.1	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   **||||*||=||||||||||||| targets:26   GCCCUGUCUUUCCUUCUCUCUCU   48 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis lipid phosphate phosphatase 2 (LOC105041275), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019849513.1	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   **||||*||=||||||||||||| targets:26   GCCCUGUCUUUCCUUCUCUCUCU   48 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis lipid phosphate phosphatase 2 (LOC105041275), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019849515.1	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   **||||*||=||||||||||||| targets:25   GCCCUGUCUUUCCUUCUCUCUCU   47 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis lipid phosphate phosphatase 2 (LOC105041275), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_019849516.1	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   **||||*||=||||||||||||| targets:25   GCCCUGUCUUUCCUUCUCUCUCU   47 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis lipid phosphate phosphatase 2 (LOC105041275), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_010918169.2	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   **||||*||=||||||||||||| targets:69   GCCCUGUCUUUCCUUCUCUCUCU   91 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis lipid phosphate phosphatase 2 (LOC105041275), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010918170.2	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   **||||*||=||||||||||||| targets:68   GCCCUGUCUUUCCUUCUCUCUCU   90 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis lipid phosphate phosphatase 2 (LOC105041275), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_019849514.1	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   **||||*||=||||||||||||| targets:26   GCCCUGUCUUUCCUUCUCUCUCU   48 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis lipid phosphate phosphatase 2 (LOC105041275), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_010919585.2	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   *||||**|||||||||||||||| targets:16   CUCCUCCCUCUCCUUCUCUCUCU   38 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis ubiquitin carboxyl-terminal hydrolase 12 (LOC105042399), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_010919589.2	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   *||||**|||||||||||||||| targets:15   CUCCUCCCUCUCCUUCUCUCUCU   37 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis ubiquitin carboxyl-terminal hydrolase 12 (LOC105042399), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_010919591.2	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   *||||**|||||||||||||||| targets:15   CUCCUCCCUCUCCUUCUCUCUCU   37 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis ubiquitin carboxyl-terminal hydrolase 12 (LOC105042399), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_010925624.1	ncRNA:23   AAG-GACCGAGAGGAAGAGAGAGA   1   |||-|||**||||||||||||||| targets:116   UUCUCUGUAUCUCCUUCUCUCUCU   139 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis uncharacterized LOC105046877 (LOC105046877), mRNA	NA	coding protein	psRNATarget
XM_010932762.2	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   |*|||||||||||||||||=||* targets:5   UCCCUGGCUCUCCUUCUCUUUCG   27 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis digalactosyldiacylglycerol synthase 1, chloroplastic (LOC105052064), mRNA	NA	coding protein	psRNATarget
GBSV01023234.1	ncRNA:23   AA-GGACCGAGAGGAAGAGAGAGA   1   ||-|||||=||||||*|||||||| targets:936   UUGCCUGGUUCUCCUGCUCUCUCU   959 Target Full Sequence	2.5	TSA: Elaeis guineensis Unigene5063_All transcribed RNA sequence	NA	coding protein	psRNATarget
GBSV01021000.1	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   **|||*|||||||||=||||||| targets:56   GACCUUGCUCUCCUUUUCUCUCU   78 Target Full Sequence	2.5	TSA: Elaeis guineensis Unigene2828_All transcribed RNA sequence	NA	coding protein	psRNATarget
GBSV01010587.1	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   *|||||*||||||*||||||||| targets:3   CUCCUGUCUCUCCCUCUCUCUCU   25 Target Full Sequence	2.5	TSA: Elaeis guineensis CL3751.Contig1_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010929407.2	ncRNA:22   AGGACCGAGAGGAAGAGAGAGA   1   |||||*||||||*||||||||| targets:1   UCCUGUCUCUCCCUCUCUCUCU   22 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized protein At3g27210 (LOC105049673), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010929408.2	ncRNA:22   AGGACCGAGAGGAAGAGAGAGA   1   |||||*||||||*||||||||| targets:1   UCCUGUCUCUCCCUCUCUCUCU   22 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized protein At3g27210 (LOC105049673), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010915029.2	ncRNA:23   AAG-GACCGAGAGGAAGAGAGAGA   1   *||-||*||||||=|||||||||| targets:46   GUCGCUUGCUCUCUUUCUCUCUCU   69 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis probable sucrose-phosphate synthase 1 (LOC105039053), transcript variant X1, mRNA	NA	coding protein	psRNATarget
GBSV01014174.1	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   ||==*||||||||*||||||||| targets:2890   UUUUGGGCUCUCCCUCUCUCUCU   2912 Target Full Sequence	2.5	TSA: Elaeis guineensis CL5188.Contig2_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010936927.2	ncRNA:23   AAGGACCGAGAGGAAGAGAGAGA   1   **=|||*|||||=|||||||||| targets:6   GCUCUGCCUCUCUUUCUCUCUCU   28 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105055178 (LOC105055178), mRNA	NA	coding protein	psRNATarget