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BaseInfo

ncRNA ID novel_egu_miR35
Species Elaeis guineensis
Class miRNA
Genome position Chr10:8866360-8866443 [-]
Reference genome EG5
Source SRR5189964
Length 20
Mature sequence(if miRNA) 1 - AUCUGAUCAGGAUUCGAGUU - 20
Stem-loop(if miRNA) --UC      -G    G     GG          GA     UG
    UGAAUU  GAUC AGAUU  GAUCUGGGUC  GAUCU  A
    ||||||  |||| |||||  ||||||||||  |||||
    GCUUAG  CUAG UCUAG  CUAGACCUAG  UUAGG  U
UUGA      GA    -     AG          AG     CU
Stem-loop sequence UCUGAAUUGGAUCGAGAUUGGGAUCUGGGUCGAGAUCUUGAUUCGGAUUGAGAUCCAGAUCGAGAUCUGAUCAGGAUUCGAGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010945551.2
ncRNA:20   UUGAGCUUAGGACUAGUCUA   1
  *|||*||||||||||*||||
targets:2748   CACUGGAAUCCUGAUGAGAU   2767

2.5 PREDICTED: Elaeis guineensis pentatricopeptide repeat-containing protein At5g65560-like (LOC105061489), mRNA NA coding protein psRNATarget
GBSV01036436.1
ncRNA:20   UUGAGCUUAGGACUAGUCUA   1
  ||||**|||||||||||||*
targets:174   AACUAAAAUCCUGAUCAGAA   193

3.0 TSA: Elaeis guineensis Unigene18271_All transcribed RNA sequence NA coding protein psRNATarget