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BaseInfo

ncRNA ID	novel_egu_miR29
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr9:7042029-7042210 [-]
Reference genome	EG5
Source	SRR5189964
Length	24
Mature sequence(if miRNA)	159 - GAAAUUCUUUGUGCAUCGCGGACA - 182
Stem-loop(if miRNA)	--      C              A A     A  C  CA         CGC            C          UA UAAAAA     UUU   GAAAUU UUUGUGCAUCGCGG C GUGCA AA CG  UGCACCGCC   GGUGAUUGGUUC CGCGCGGGGU  A      AAUAU   U   |||||| |||||||||||||| | ||||| || ||  |||||||||   |||||||||||| ||||||||||  |      |||||   U   CUUUAA AAACACGUGGUGCC G CACGU UU GC  ACGUGGUGG   CCACUAACCAAG GCGUGCCUUA  U      UUGUA   U AU      A              C C     A  U  AC         AUA            U          GC -UUACG     UGC
Stem-loop sequence	GAAAUUCUUUGUGCAUCGCGGACAGUGCAAAACCGCAUGCACCGCCCGCGGUGAUUGGUUCCCGCGCGGGGUUAAUAAAAAAAUAUUUUUUUCGUAUGUUGCAUUUCGAUUCCGUGCGUGAACCAAUCACCAUAGGUGGUGCACACGUUUAUGCACCGCCCGUGGUGCACAAAAAAUUUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_010906546.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*|||||=||||||||||||||| targets:7   CGCCCGCGGUGCACAAAGAAUUUC   30 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis sec14 cytosolic factor (LOC105032176), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010906545.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*|||||=||||||||||||||| targets:7   CGCCCGCGGUGCACAAAGAAUUUC   30 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis sec14 cytosolic factor (LOC105032176), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010906543.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*|||||=||||||||||||||| targets:6   CGCCCGCGGUGCACAAAGAAUUUC   29 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis sec14 cytosolic factor (LOC105032176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010927945.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*|||||=||||||||||||||| targets:10   CGCCCGCGGUGCACAAAGAAUUUC   33 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis thioredoxin domain-containing protein PLP3A (LOC105048599), mRNA	NA	coding protein	psRNATarget
GBSV01034655.1	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*|=|||=||||||||||||||| targets:32   CGCCUGCGGUGCACAAAGAAUUUC   55 Target Full Sequence	1.0	TSA: Elaeis guineensis Unigene16488_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010923667.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*|=|||=||||||||||||||| targets:27   CGCCUGCGGUGCACAAAGAAUUUC   50 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis isoleucine--tRNA ligase, cytoplasmic (LOC105045400), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010923666.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*|=|||=||||||||||||||| targets:27   CGCCUGCGGUGCACAAAGAAUUUC   50 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis isoleucine--tRNA ligase, cytoplasmic (LOC105045400), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010913815.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|***|||=||||||||||||||| targets:11   CGCGGGCGGUGCACAAAGAAUUUC   34 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis probable E3 ubiquitin-protein ligase ARI8 (LOC105038120), mRNA	NA	coding protein	psRNATarget
XM_010921199.2	ncRNA:19   CGCUACGUGUUUCUUAAAG   1   |||*||||||||||||||| targets:1   GCGCUGCACAAAGAAUUUC   19 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis probable lipid phosphate phosphatase beta (LOC105043608), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019849765.1	ncRNA:19   CGCUACGUGUUUCUUAAAG   1   |||*||||||||||||||| targets:1   GCGCUGCACAAAGAAUUUC   19 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis probable lipid phosphate phosphatase beta (LOC105043608), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_010921200.2	ncRNA:19   CGCUACGUGUUUCUUAAAG   1   |||*||||||||||||||| targets:1   GCGCUGCACAAAGAAUUUC   19 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis probable lipid phosphate phosphatase beta (LOC105043608), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_019849764.1	ncRNA:19   CGCUACGUGUUUCUUAAAG   1   |||*||||||||||||||| targets:1   GCGCUGCACAAAGAAUUUC   19 Target Full Sequence	1.0	PREDICTED: Elaeis guineensis probable lipid phosphate phosphatase beta (LOC105043608), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010908530.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*|||=|=||||||||||||||| targets:54   GGCCCGUGGUGCACAAAGAAUUUC   77 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis uncharacterized LOC105033646 (LOC105033646), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010908531.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*|||=|=||||||||||||||| targets:54   GGCCCGUGGUGCACAAAGAAUUUC   77 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis uncharacterized LOC105033646 (LOC105033646), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010943931.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*|||=|=||||||||||||||| targets:27   CGCCCGUGGUGCACAAAGAAUUUC   50 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis serine/threonine-protein kinase 16-like (LOC105060283), mRNA	NA	coding protein	psRNATarget
GBSV01018617.1	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*||*||=||||||||||||||| targets:24   AGCCCCCGGUGCACAAAGAAUUUC   47 Target Full Sequence	2.0	TSA: Elaeis guineensis Unigene445_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010919605.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*||*||=||||||||||||||| targets:91   AGCCCCCGGUGCACAAAGAAUUUC   114 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis prolycopene isomerase 1, chloroplastic-like (LOC105042411), transcript variant X2, mRNA	NA	coding protein	psRNATarget
GBSV01028088.1	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   ***|||||=*|||||||||||||| targets:15   CCCCCGCGGCGCACAAAGAAUUUC   38 Target Full Sequence	2.0	TSA: Elaeis guineensis Unigene9921_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010919604.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*||*||=||||||||||||||| targets:92   AGCCCCCGGUGCACAAAGAAUUUC   115 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis prolycopene isomerase 1, chloroplastic-like (LOC105042411), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010913937.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   ***|||||=*|||||||||||||| targets:11   CCCCCGCGGCGCACAAAGAAUUUC   34 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis fructose-bisphosphate aldolase 1, cytoplasmic (LOC105038211), mRNA	NA	coding protein	psRNATarget
GBSV01019657.1	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*|=|||=*|||||||||||||| targets:3   CGCCUGCGGCGCACAAAGAAUUUC   26 Target Full Sequence	2.0	TSA: Elaeis guineensis Unigene1485_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010930470.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|||||=||||||||=|||||||| targets:20   CGUCCGUGAUGCACAGAGAAUUUC   43 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis ethanolamine-phosphate cytidylyltransferase-like (LOC105050448), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010930469.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|||||=||||||||=|||||||| targets:12   CGUCCGUGAUGCACAGAGAAUUUC   35 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis ethanolamine-phosphate cytidylyltransferase-like (LOC105050448), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010908110.2	ncRNA:24   ACA-------GGCGCUACGUGUUUCUUAAAG   1   |||-------|||||=||||||=|||||||| targets:14   UGUGCACCGCCCGCGGUGCACAGAGAAUUUC   44 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis dr1-associated corepressor-like (LOC105033351), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010908111.2	ncRNA:24   ACA-------GGCGCUACGUGUUUCUUAAAG   1   |||-------|||||=||||||=|||||||| targets:18   UGUGCACCGCCCGCGGUGCACAGAGAAUUUC   48 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis dr1-associated corepressor-like (LOC105033351), transcript variant X2, mRNA	NA	coding protein	psRNATarget
GBSV01009314.1	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*|||||=||||||||||=|||| targets:799   CGCCCGCGGUGCACAAAGAGUUUC   822 Target Full Sequence	2.5	TSA: Elaeis guineensis CL3251.Contig1_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010909537.1	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*|||||=||||||=|||||||| targets:31   CGCCCGCGGUGCACAGAGAAUUUC   54 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis 50S ribosomal protein L6, chloroplastic (LOC105034395), mRNA	NA	coding protein	psRNATarget
XM_019849132.1	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   ***|||||=|||||=||||||||| targets:27   CCGCCGCGGUGCACGAAGAAUUUC   50 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis uncharacterized LOC105041370 (LOC105041370), mRNA	NA	coding protein	psRNATarget
XM_010912851.2	ncRNA:24   ACA-----GGCGCUACGUGUUUCUUAAAG   1   |||-----|||||=|||||||||*||||| targets:43   UGUGAGCCCCGCGGUGCACAAAGCAUUUC   71 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis cysteine-rich receptor-like protein kinase 6 (LOC105037158), mRNA	NA	coding protein	psRNATarget
XM_010935891.1	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*|||||=|||||||||*||||| targets:71   CGCCCGCGGUGCACAAAGCAUUUC   94 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis ER membrane protein complex subunit 8/9 homolog (LOC105054403), mRNA	NA	coding protein	psRNATarget
XM_010936752.1	ncRNA:22   AGGCGCUACGUGUUUCUUAAAG   1   *|||||=|||||||||*||||| targets:1   ACCGCGGUGCACAAAGUAUUUC   22 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis translocon-associated protein subunit alpha (LOC105055052), mRNA	NA	coding protein	psRNATarget
XM_010917083.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   ***|||||=||||*|||||||||| targets:43   GCACCGCGGUGCAGAAAGAAUUUC   66 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis clavaminate synthase-like protein At3g21360 (LOC105040526), mRNA	NA	coding protein	psRNATarget
XM_010912711.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|*|=|||=||||||||||||*|| targets:35   CGCCUGCGGUGCACAAAGAAUCUC   58 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis OTU domain-containing protein 6B-like (LOC105037001), mRNA	NA	coding protein	psRNATarget
XM_010933435.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   *|***|||=|||=||||||||||| targets:46   CGCGGGCGGUGCGCAAAGAAUUUC   69 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis transcription initiation factor TFIID subunit 13 (LOC105052582), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019853505.1	ncRNA:24   ACAGGC-GCUACGUGUUUCUUAAAG   1   ***|||-||=||||||||||||||| targets:15   CCGCCGGCGGUGCACAAAGAAUUUC   39 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis autophagy-related protein 3-like (LOC105054333), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010926456.2	ncRNA:20   GCG-CUACGUGUUUCUUAAAG   1   |||-|=||||||||||||||| targets:1   CGCCGGUGCACAAAGAAUUUC   21 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis NADPH-dependent diflavin oxidoreductase 1 (LOC105047512), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010924761.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   ***||*=|=||||||||||||||| targets:2253   CAGCCAUGGUGCACAAAGAAUUUC   2276 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis jmjC domain-containing protein 4 (LOC105046236), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010924768.2	ncRNA:24   ACAGGCGCUACGUGUUUCUUAAAG   1   ***||*=|=||||||||||||||| targets:2253   CAGCCAUGGUGCACAAAGAAUUUC   2276 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis jmjC domain-containing protein 4 (LOC105046236), transcript variant X1, mRNA	NA	coding protein	psRNATarget