Search result

BaseInfo

ncRNA ID	novel_egu_miR22
Species	Elaeis guineensis
Class	miRNA
Genome position	Chr9:27003880-27003971 [-]
Reference genome	EG5
Source	SRR5189964;SRR5189967;SRR3042544;SRR3042545;SRR3042542;SRR3042547;SRR3042548
Length	21
Mature sequence(if miRNA)	1 - UUAGAUGACCAUCAGCAAACG - 21
Stem-loop(if miRNA)	-U         A            --     A  UCCUCUUUCCCC   UUUGCUGAU GUCAUCUAAUCA  UCUUC AA            C   ||||||||| ||||||||||||  ||||| ||            A   AAACGACUA CAGUAGAUUGGU  AGAAG GU            C GC         C            AC     C  GAAGUUUAAUUU
Stem-loop sequence	UUUUGCUGAUAGUCAUCUAAUCAUCUUCAAAUCCUCUUUCCCCCACUUUAAUUUGAAGUGCGAAGACAUGGUUAGAUGACCAUCAGCAAACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JO098968.1	ncRNA:21   GCAAACGACUACCAGUAGAUU   1   *|||||||||||||||||||| targets:24   GGUUUGCUGAUGGUCAUCUAA   44 Target Full Sequence	0.0	TSA: Elaeis guineensis isotig11741.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
XM_019850060.1	ncRNA:21   GCAAACGACUACCAGUAGAUU   1   *|||||||||||||||||||| targets:126   GGUUUGCUGAUGGUCAUCUAA   146 Target Full Sequence	0.0	PREDICTED: Elaeis guineensis SPX domain-containing membrane protein OsI_17046 (LOC105043377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019850062.1	ncRNA:21   GCAAACGACUACCAGUAGAUU   1   *|||||||||||||||||||| targets:126   GGUUUGCUGAUGGUCAUCUAA   146 Target Full Sequence	0.0	PREDICTED: Elaeis guineensis SPX domain-containing membrane protein OsI_17046 (LOC105043377), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010909353.2	ncRNA:21   GCAAACGACUACCAGUAGAUU   1   |*||||||||||||*|||||| targets:136   CUUUUGCUGAUGGUAAUCUAA   156 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis SPX domain-containing membrane protein Os06g0129400-like (LOC105034273), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010907669.1	ncRNA:21   GCAAACGACUACCAGUAGAUU   1   **||||=|||||||=|||||| targets:1133   AUUUUGUUGAUGGUUAUCUAA   1153 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis L-ascorbate oxidase-like (LOC105033034), mRNA	NA	coding protein	psRNATarget
XM_019853591.1	ncRNA:21   GCAAACGACUACCAGUAGAUU   1   *|||||=|||||*|||||||| targets:307   GGUUUGUUGAUGUUCAUCUAA   327 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis SPX domain-containing membrane protein OsI_17046-like (LOC105054157), mRNA	NA	coding protein	psRNATarget