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BaseInfo

ncRNA ID novel_egu_miR15
Species Elaeis guineensis
Class miRNA
Genome position Chr8:5763597-5763666 [-]
Reference genome EG5
Source SRR5189964;SRR5189967;SRR3042544;SRR3042545;SRR3042542;SRR3042547;SRR3042548
Length 21
Mature sequence(if miRNA) 50 - AGAAGAGAGAGAGUACAGCCU - 70
Stem-loop(if miRNA) --     A     A       -   --A -      G
  AGAAG GAGAG GUACAGC CUC   C UCUCAU A
  ||||| ||||| ||||||| |||   | ||||||
  UCUUC CUCUC CAUGUCG GAG   G GGGGUG U
CU     C     C       A   GUA U      G
Stem-loop sequence AGAAGAGAGAGAGUACAGCCUCACUCUCAUGAUGGUGGGGUGAUGGAGAGCUGUACCCUCUCCCUUCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01026229.1
ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1
  **|||||=|||||||||||||
targets:224   CAGCUGUGCUCUCUCUCUUCU   244

1.0 TSA: Elaeis guineensis Unigene8059_All transcribed RNA sequence NA coding protein psRNATarget
XM_010930141.2
ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1
  **|||||=|||||||||||||
targets:901   CAGCUGUGCUCUCUCUCUUCU   921

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105050210), mRNA NA coding protein psRNATarget
XM_010945250.2
ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1
  **|||||=|||||||||||||
targets:1010   CAGCUGUGCUCUCUCUCUUCU   1030

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105061255), transcript variant X4, mRNA NA coding protein psRNATarget
XM_010945248.2
ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1
  **|||||=|||||||||||||
targets:1014   CAGCUGUGCUCUCUCUCUUCU   1034

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105061255), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010945249.2
ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1
  **|||||=|||||||||||||
targets:1031   CAGCUGUGCUCUCUCUCUUCU   1051

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105061255), transcript variant X3, mRNA NA coding protein psRNATarget
XM_010945247.2
ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1
  **|||||=|||||||||||||
targets:1045   CAGCUGUGCUCUCUCUCUUCU   1065

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 14 (LOC105061255), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010915611.2
ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1
  **|||||=|||||||||||||
targets:1084   CAGCUGUGCUCUCUCUCUUCU   1104

1.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 17 (LOC105039459), mRNA NA coding protein psRNATarget
XM_010919254.2
ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1
  *|*||||=|||||||||||||
targets:1664   UGACUGUGCUCUCUCUCUUCU   1684

2.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 18 (LOC105042144), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010919253.2
ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1
  *|*||||=|||||||||||||
targets:1822   UGACUGUGCUCUCUCUCUUCU   1842

2.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 18 (LOC105042144), transcript variant X1, mRNA NA coding protein psRNATarget
XM_010927851.2
ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1
  =*|||*|=|||||||||||||
targets:68   GAGCUCUGCUCUCUCUCUUCU   88

2.0 PREDICTED: Elaeis guineensis ERAD-associated E3 ubiquitin-protein ligase component HRD3 (LOC105048527), transcript variant X2, mRNA NA coding protein psRNATarget
XM_010927850.2
ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1
  =*|||*|=|||||||||||||
targets:67   GAGCUCUGCUCUCUCUCUUCU   87

2.0 PREDICTED: Elaeis guineensis ERAD-associated E3 ubiquitin-protein ligase component HRD3 (LOC105048527), transcript variant X1, mRNA NA coding protein psRNATarget
GBSV01028385.1
ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1
  =||=*||=|||||||||||||
targets:345   GGGUCGUGCUCUCUCUCUUCU   365

3.0 TSA: Elaeis guineensis Unigene10218_All transcribed RNA sequence NA coding protein psRNATarget
XM_010921288.2
ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1
  =||=*||=|||||||||||||
targets:1038   GGGUCGUGCUCUCUCUCUUCU   1058

3.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 7 (LOC105043657), mRNA NA coding protein psRNATarget
XM_010928539.2
ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1
  *|*=|||=|||||||||||||
targets:1853   UGAUUGUGCUCUCUCUCUUCU   1873

3.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 16 (LOC105049005), mRNA NA coding protein psRNATarget
XM_010929438.2
ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1
  *|*=|||=|||||||||||||
targets:1919   UGAUUGUGCUCUCUCUCUUCU   1939

3.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 16 (LOC105049697), mRNA NA coding protein psRNATarget
XM_010914718.2
ncRNA:21   UCCGACAUGAGAGAGAGAAGA   1
  *|*=|||=|||||||||||||
targets:2175   UGAUUGUGCUCUCUCUCUUCU   2195

3.0 PREDICTED: Elaeis guineensis squamosa promoter-binding-like protein 16 (LOC105038812), mRNA NA coding protein psRNATarget
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