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BaseInfo

ncRNA ID	ath-miRf10850-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - GUCUCUAGAGGAGCCAGAGCCA - NA
Stem-loop(if miRNA)	-  UCU  A -A              ---     AAA    GAGAGG      ---C    CUA    AUUUA     AACACAAGAAUCACUCACACGUUCGGCUGAUCCAAGA CUGAGG UG   CU G  GGAGCCAGAGCCAA   AGGAG   UGCA      AGUUAC    AGGU   CCAG     GAUUU                                     G |||||| ||   || |  ||||||||||||||   |||||   ||||      ||||||    ||||   ||||     |||||                                     C GACUCC AC   GA C  UCUUGGUCUCGGUU   UCCUC   AUGU      UCAAUG    UCCG   GGUC     UAGUC                                     C       U  UAC  C CG              AGU     -GA    GAGUAA      CCUA    -UA    ----A     GACUGGGUAGAGACUUCAGUAGACUAAAAACCCCAUG
Stem-loop sequence	CUGAGGUGUCUCUAGAGGAGCCAGAGCCAAAGGAGAAAUGCAGAGAGGAGUUACCAGGUCUACCAGAUUUAGAUUUAACACAAGAAUCACUCACACGUUCGGCUGAUCCAAGAGCCGUACCCCAAAAAUCAGAUGACUUCAGAGAUGGGUCAGCUGAUACUGGAUGCCUAUCCGUAACUAAUGAGUGUAAGCUCCUUGAUUGGCUCUGGUUCUGCCCAGCAUCAUCCUCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AF302666.1	ncRNA:22   ACCGAGACCGAGGAGAUCUCUG   1   |||||||||||||||||||||| targets:1062   UGGCUCUGGCUCCUCUAGAGAC   1083 Target Full Sequence	0.0	Arabidopsis thaliana ubiquitin-specific protease 16 (UBP16) mRNA, complete cds	NA	coding protein	psRNATarget
AK227079.1	ncRNA:22   ACCGAGACCGAGGAGAUCUCUG   1   |||||||||||||||||||||| targets:1328   UGGCUCUGGCUCCUCUAGAGAC   1349 Target Full Sequence	0.0	Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL09-67-L15	NA	coding protein	psRNATarget
NM_118589.3	ncRNA:22   ACCGAGACCGAGGAGAUCUCUG   1   |||||||||||||||||||||| targets:1486   UGGCUCUGGCUCCUCUAGAGAC   1507 Target Full Sequence	0.0	Arabidopsis thaliana ubiquitin-specific protease 16 (UBP16), mRNA	ubiquitin-specific protease 16(UBP16)	coding protein	psRNATarget
AF482995.1	ncRNA:22   ACCGAGACCGAGGAGAUCUCUG   1   ||*|||||*||||||||||||| targets:558   UGUCUCUGCCUCCUCUAGAGAC   579 Target Full Sequence	1.0	Arabidopsis thaliana RLD homeodomain protein KNAT1/BP mRNA, complete cds	NA	coding protein	psRNATarget
AF482994.1	ncRNA:22   ACCGAGACCGAGGAGAUCUCUG   1   ||*|||||*||||||||||||| targets:558   UGUCUCUGCCUCCUCUAGAGAC   579 Target Full Sequence	1.0	Arabidopsis thaliana Landsberg erecta homeodomain protein KNAT1/BP mRNA, complete cds	NA	coding protein	psRNATarget
AY113982.1	ncRNA:22   ACCGAGACCGAGGAGAUCUCUG   1   ||*|||||*||||||||||||| targets:552   UGUCUCUGCCUCCUCUAGAGAC   573 Target Full Sequence	1.0	Arabidopsis thaliana putative KNAT1 homeobox protein (At4g08150) mRNA, complete cds	NA	coding protein	psRNATarget
AY080834.1	ncRNA:22   ACCGAGACCGAGGAGAUCUCUG   1   ||*|||||*||||||||||||| targets:657   UGUCUCUGCCUCCUCUAGAGAC   678 Target Full Sequence	1.0	Arabidopsis thaliana putative KNAT1 homeobox protein (At4g08150) mRNA, complete cds	NA	coding protein	psRNATarget
NM_116884.4	ncRNA:22   ACCGAGACCGAGGAGAUCUCUG   1   ||*|||||*||||||||||||| targets:1101   UGUCUCUGCCUCCUCUAGAGAC   1122 Target Full Sequence	1.0	Arabidopsis thaliana homeobox knotted-like protein (KNAT1), mRNA	homeobox knotted-like protein(KNAT1)	coding protein	psRNATarget