ncRNA ID | novel_egu_miR6 |
Species | Elaeis guineensis |
Class | miRNA |
Genome position | Chr7:33723852-33723970 [+] |
Reference genome | EG5 |
Source | SRR5189964 |
Length | 21 |
Mature sequence(if miRNA) | 1 - AGAGGACAUCACGGAGGUCUC - 21 |
Stem-loop(if miRNA) |
--      -CA    -    G       - -  G   G      ----C     GG       G   AGAGGA   UCAC GGAG UCUCUAA C CU UCU CAGAGG     GGCUA  CUUCGAG U   ||||||   |||| |||| ||||||| | || ||| ||||||     |||||  |||||||   UCUCUU   AGUG CCUC AGGGAUU G GA AGA GUUUUU     UCGGU  GAGGUUU G CA      CGG    A    -       A A  G   A      UAGUU     GA       U |
Stem-loop sequence | AGAGGACAUCACGGAGGUCUCUAACCUGUCUGCAGAGGCGGCUAGGCUUCGAGGUGUUUUGGAGAGUGGCUUUGAUUUUUUGAAGAGAGAGAUUAGGGACUCCAGUGAGGCUUCUCUAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GBSV01021971.1 |
|
2.5 | TSA: Elaeis guineensis Unigene3799_All transcribed RNA sequence | NA | coding protein | psRNATarget | |||||||||
XM_010935949.2 |
|
2.5 | PREDICTED: Elaeis guineensis protein NRT1/ PTR FAMILY 5.2 (LOC105054447), mRNA | NA | coding protein | psRNATarget |