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BaseInfo

ncRNA ID novel_egu_miR6
Species Elaeis guineensis
Class miRNA
Genome position Chr7:33723852-33723970 [+]
Reference genome EG5
Source SRR5189964
Length 21
Mature sequence(if miRNA) 1 - AGAGGACAUCACGGAGGUCUC - 21
Stem-loop(if miRNA) --      -CA    -    G       - -  G   G      ----C     GG       G
  AGAGGA   UCAC GGAG UCUCUAA C CU UCU CAGAGG     GGCUA  CUUCGAG U
  ||||||   |||| |||| ||||||| | || ||| ||||||     |||||  |||||||
  UCUCUU   AGUG CCUC AGGGAUU G GA AGA GUUUUU     UCGGU  GAGGUUU G
CA      CGG    A    -       A A  G   A      UAGUU     GA       U
Stem-loop sequence AGAGGACAUCACGGAGGUCUCUAACCUGUCUGCAGAGGCGGCUAGGCUUCGAGGUGUUUUGGAGAGUGGCUUUGAUUUUUUGAAGAGAGAGAUUAGGGACUCCAGUGAGGCUUCUCUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
GBSV01021971.1
ncRNA:21   CUCUGGAGGCACUACAGGAGA   1
  *=|||||=||||||*||||||
targets:245   UGGACCUUCGUGAUAUCCUCU   265

2.5 TSA: Elaeis guineensis Unigene3799_All transcribed RNA sequence NA coding protein psRNATarget
XM_010935949.2
ncRNA:21   CUCUGGAGGCACUACAGGAGA   1
  *=|||||=||||||*||||||
targets:513   UGGACCUUCGUGAUAUCCUCU   533

2.5 PREDICTED: Elaeis guineensis protein NRT1/ PTR FAMILY 5.2 (LOC105054447), mRNA NA coding protein psRNATarget