Search result

BaseInfo

ncRNA ID novel_egu_miR4
Species Elaeis guineensis
Class miRNA
Genome position Chr7:26034937-26035039 [+]
Reference genome EG5
Source SRR5189964
Length 20
Mature sequence(if miRNA) 84 - GUCUGGGAAAGAAUGCGGAU - 103
Stem-loop(if miRNA) --G   -    G G UG         -    UUU    U GA   -G   GAA
   UGC UUCU U U  GACGGUUUC UCUA   ACUG G  UAA  AGU   A
   ||| |||| | |  ||||||||| ||||   |||| |  |||  |||
   GCG AAGA A G  CUGUUAGAG AGAU   UGAC C  GUU  UCA   G
UAG   U    A G GU         G    UAC    U AC   AA   GCU
Stem-loop sequence GUGCUUCUGUGUUGGACGGUUUCUCUAUUUACUGUGGAUAAGAGUGAAAGUCGACUAAUUGCACUCAGUCAUUAGAGGAGAUUGUCUGGGAAAGAAUGCGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_019853406.1
ncRNA:20   UAGGCGUAAGAAAGGGUCUG   1
  |||||=||||||||=|||||
targets:64   AUCCGUAUUCUUUCUCAGAC   83

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC109506364 (LOC109506364), mRNA NA coding protein psRNATarget
GBSV01034194.1
ncRNA:20   UAGGCGUAAGAAAGGGUCUG   1
  ||||*|||||||||||*|||
targets:180   AUCCUCAUUCUUUCCCUGAC   199

2.5 TSA: Elaeis guineensis Unigene16027_All transcribed RNA sequence NA coding protein psRNATarget
XM_010926466.2
ncRNA:20   UAGGCGUAAGAAAGGGUCUG   1
  ||||*|||||||||||*|||
targets:286   AUCCUCAUUCUUUCCCUGAC   305

2.5 PREDICTED: Elaeis guineensis uncharacterized LOC105047520 (LOC105047520), mRNA NA coding protein psRNATarget
XM_010942784.2
ncRNA:20   UAGGCGUAAGAAAGGGUCUG   1
  *|=|||*||||||||||||*
targets:813   CUUCGCUUUCUUUCCCAGAA   832

3.0 PREDICTED: Elaeis guineensis cytochrome P450 89A2 (LOC105059484), mRNA NA coding protein psRNATarget