ncRNA ID | novel_csa_miR141 |
Species | Camelina sativa |
Class | miRNA |
Genome position | Chr8:15965904-15966093 [-] |
Reference genome | Cs |
Source | SRR1736515 |
Length | 24 |
Mature sequence(if miRNA) | 167 - AUAGAAUUUCCAAAAACCAAGAGU - 190 |
Stem-loop(if miRNA) |
--AUA       C      CA              A   C   GU  U          A        A   A                 U     A      GAAUUUC AAAAAC  AGAGUAGAGAAUAA UGA AAG  GA GAGAGAAGUU AAGAGAAU UUC ACAAUAGAGGUUUCAGG AAGAA U      ||||||| ||||||  |||||||||||||| ||| |||  || |||||||||| |||||||| ||| ||||||||||||||||| |||||      CUUAAAG UUUUUG  UCUCGUCUCUUAUU GCU UUC  CU CUUUCUUCGA UUCUCUUA AAG UGUUGUCUCCAAAGUUU UUUUU A CCUAA       A      CC              -   C   GU  C          A        G   G                 -     C |
Stem-loop sequence | AUAGAAUUUCCAAAAACCAAGAGUAGAGAAUAAAUGACAAGGUGAUGAGAGAAGUUAAAGAGAAUAUUCAACAAUAGAGGUUUCAGGUAAGAAAUACUUUUUUUUGAAACCUCUGUUGUGGAAGAUUCUCUUAAGCUUCUUUCCUCUGCUUCUCGUUAUUCUCUGCUCUCCGUUUUUAGAAAUUCAAUCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_010457067.2 |
|
2.5 | PREDICTED: Camelina sativa uncharacterized LOC104736969 (LOC104736969), mRNA | NA | coding protein | psRNATarget |