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BaseInfo

ncRNA ID novel_csa_miR141
Species Camelina sativa
Class miRNA
Genome position Chr8:15965904-15966093 [-]
Reference genome Cs
Source SRR1736515
Length 24
Mature sequence(if miRNA) 167 - AUAGAAUUUCCAAAAACCAAGAGU - 190
Stem-loop(if miRNA) --AUA       C      CA              A   C   GU  U          A        A   A                 U     A
     GAAUUUC AAAAAC  AGAGUAGAGAAUAA UGA AAG  GA GAGAGAAGUU AAGAGAAU UUC ACAAUAGAGGUUUCAGG AAGAA U
     ||||||| ||||||  |||||||||||||| ||| |||  || |||||||||| |||||||| ||| ||||||||||||||||| |||||
     CUUAAAG UUUUUG  UCUCGUCUCUUAUU GCU UUC  CU CUUUCUUCGA UUCUCUUA AAG UGUUGUCUCCAAAGUUU UUUUU A
CCUAA       A      CC              -   C   GU  C          A        G   G                 -     C
Stem-loop sequence AUAGAAUUUCCAAAAACCAAGAGUAGAGAAUAAAUGACAAGGUGAUGAGAGAAGUUAAAGAGAAUAUUCAACAAUAGAGGUUUCAGGUAAGAAAUACUUUUUUUUGAAACCUCUGUUGUGGAAGAUUCUCUUAAGCUUCUUUCCUCUGCUUCUCGUUAUUCUCUGCUCUCCGUUUUUAGAAAUUCAAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_010457067.2
ncRNA:24   UGAGAACCAAAAACCUUUAAGAUA   1
  *|||||*|||||*|||||||||||
targets:349   UCUCUUAGUUUUGGGAAAUUCUAU   372

2.5 PREDICTED: Camelina sativa uncharacterized LOC104736969 (LOC104736969), mRNA NA coding protein psRNATarget