Search result

BaseInfo

ncRNA ID	novel_csa_miR130
Species	Camelina sativa
Class	miRNA
Genome position	Chr6:16891475-16891566 [+]
Reference genome	Cs
Source	SRR1736515
Length	21
Mature sequence(if miRNA)	1 - GCAACAUCUUCAAGAUUCAGA - 21
Stem-loop(if miRNA)	--   A    U         AG         UCUUU  A       C   GCA CAUC UCAAGAUUC  AAAUCAGAU     UA GGGUUCU C   ||| |||| |||||||||  |||||||||     || ||||||| U   CGU GUAG AGUUCUAAG  UUUAGUUUA     AU UCCGAGG U GA   C    U         AG         ---CU  A       U
Stem-loop sequence	GCAACAUCUUCAAGAUUCAGAAAUCAGAUUCUUUUAAGGGUUCUCCUUUGGAGCCUAUAUCAUUUGAUUUGAGAAUCUUGAUGAUGCUGCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
GAFB01028710.1	ncRNA:21   AGACUUAGAACUUCUACAACG   1   ||*|||||||||||*|||||| targets:24   UCAGAAUCUUGAAGUUGUUGC   44 Target Full Sequence	2.5	TSA: Camelina sativa Locus_9263_Transcript_1/11_Confidence_1.000_Length_226 mRNA sequence	NA	coding protein	psRNATarget
GABO01053103.1	ncRNA:21   AGACUUAGAACUUCUACAACG   1   *||*|||||||||*||||||| targets:388   ACUUAAUCUUGAAAAUGUUGC   408 Target Full Sequence	2.5	TSA: Camelina sativa Unigene82448_WT mRNA sequence	NA	coding protein	psRNATarget
GAFB01024068.1	ncRNA:21   AGACUUAGAACUUCUACAACG   1   *||*|||||||||*||||||| targets:438   ACUUAAUCUUGAAAAUGUUGC   458 Target Full Sequence	2.5	TSA: Camelina sativa Locus_7070_Transcript_1/1_Confidence_1.000_Length_1196 mRNA sequence	NA	coding protein	psRNATarget
XM_010505731.2	ncRNA:21   AGACUUAGAACUUCUACAACG   1   **||||||||||*|||||||* targets:1089   AGUGAAUCUUGACGAUGUUGA   1109 Target Full Sequence	2.5	PREDICTED: Camelina sativa IQ domain-containing protein IQM3 (LOC104781138), mRNA	NA	coding protein	psRNATarget