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BaseInfo

ncRNA ID	novel_csa_miR127
Species	Camelina sativa
Class	miRNA
Genome position	Chr11:28719156-28719323 [-]
Reference genome	Cs
Source	SRR1736515
Length	21
Mature sequence(if miRNA)	1 - CUUGGACUGAAGGGAGCUCCC - 21
Stem-loop(if miRNA)	--     UU          CU       UAAUAU    -         -GA      AC     C  C  AA         AAU AA   GAGCU  CUUCGGUCCA  CAUGGAG      GUGA GAUUUAAUU   CUCUCG  UCAUU AU CA  UACCAUAUG   G  U   |||||  ||||||||||  |||||||      |||| |||||||||   ||||||  ||||| || ||  |||||||||   |   CUCGA  GAAGUCAGGU  GUAUCUC      CACU CUGAGUUAA   GAGAGC  AGUAA UA GU  AUGGUAUAC   C  A CC     GG          UC       ----UU    U         ACA      GU     U  A  AA         GCC GU
Stem-loop sequence	GAGCUUUCUUCGGUCCACUCAUGGAGUAAUAUGUGAGAUUUAAUUGACUCUCGACUCAUUCAUCCAAAUACCAUAUGAAUGAAUAUGCCCGCAUAUGGUAAAUGAAUUAAUGAUGCGAGAGACAAAUUGAGUCUUCACUUCUCUAUGCUUGGACUGAAGGGAGCUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
GAFB01044580.1	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   ||||||||||||||||||||| targets:319   GGGAGCUCCCUUCAGUCCAAG   339 Target Full Sequence	0.0	TSA: Camelina sativa Locus_18636_Transcript_1/1_Confidence_1.000_Length_807 mRNA sequence	NA	coding protein	psRNATarget
XM_010466545.2	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   *|||||||||||||*|||||* targets:1189   UGGAGCUCCCUUCAUUCCAAU   1209 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104745344), mRNA	NA	coding protein	psRNATarget
XM_010497488.2	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   *|||||||||||||*|||||* targets:1211   UGGAGCUCCCUUCAUUCCAAU   1231 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104772907), mRNA	NA	coding protein	psRNATarget
XM_010492854.2	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   *|||||||||||||*|||||* targets:1150   UGGAGCUCCCUUCAUUCCAAU   1170 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104768802), mRNA	NA	coding protein	psRNATarget
XM_010425084.2	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   *|||||||||||||*|||||* targets:1239   UGGAGCUCCCUUCAUUCCAAU   1259 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104708501), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010454221.2	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   *|||||||||||||*|||||* targets:1221   UGGAGCUCCCUUCAUUCCAAU   1241 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104734613), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010425085.2	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   *|||||||||||||*|||||* targets:1283   UGGAGCUCCCUUCAUUCCAAU   1303 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104708501), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010454222.2	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   *|||||||||||||*|||||* targets:1288   UGGAGCUCCCUUCAUUCCAAU   1308 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor GAMYB-like (LOC104734613), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019245513.1	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   **||||||||||||*|||||* targets:860   ACGAGCUCCCUUCAUUCCAAU   880 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor MYB104-like (LOC104787043), mRNA	NA	coding protein	psRNATarget
XM_010474781.2	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   **||||||||||||*|||||* targets:857   ACGAGCUCCCUUCAUUCCAAU   877 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor MYB104-like (LOC104752592), mRNA	NA	coding protein	psRNATarget
XM_019228039.1	ncRNA:21   CCCUCGAGGGAAGUCAGGUUC   1   **||||||||||||*|||||* targets:936   ACGAGCUCCCUUCAUUCCAAU   956 Target Full Sequence	2.5	PREDICTED: Camelina sativa transcription factor MYB104-like (LOC104703509), mRNA	NA	coding protein	psRNATarget